Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,658,694 – 20,658,796 |
Length | 102 |
Max. P | 0.999013 |
Location | 20,658,694 – 20,658,796 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.63 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -28.66 |
Energy contribution | -28.82 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.10 |
Mean z-score | -2.24 |
Structure conservation index | 0.90 |
SVM decision value | 3.33 |
SVM RNA-class probability | 0.999013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20658694 102 - 22224390 UUGUUUGGGGACUUGCCAUAUUUUUAUGGACCCUGUGCACGCUUGCGUUUUGCAGUGGCUCUCUAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGGCGCGGA ......((((.....(((((....))))).))))((((.((((.((.....)))))).........(((((((.((((....))))..)))))))))))... ( -32.70) >DroSec_CAF1 60523 102 - 1 UUGUUUUGGGACUUGCCAUAUUUUUAUGGACCCUGUGCACGCUUGCUUUUUGCAGUGGCUCUCUAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGCCGCUGA .(((...(((.....(((((....))))).)))...))).............(((((((........((((((.((((....))))..))))))))))))). ( -31.90) >DroSim_CAF1 37892 102 - 1 UUGUUUUGGGACUUGCCAUAUUUUUAUGGACCCUGUGCACGCUUGCUUUUUGCAGUGGCUCUCUAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGGCGCUGA .......(((.....(((((....))))).))).((((.((((.((.....)))))).........(((((((.((((....))))..)))))))))))... ( -31.80) >DroEre_CAF1 56174 97 - 1 UUGUUUUGGGACUUGCCGUAUUUUUAUGGACCCUGUGCACGCUGGCUUUUUGCAGUGGCGCUCUAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGGC----- .......(((.....(((((....))))).))).((((.(((((.(.....)))))))))).....(((((((.((((....))))..)))))))..----- ( -32.00) >DroYak_CAF1 57424 102 - 1 UUGUUUUGGGACUGGCCAUAUUUUUAUGGACUCUGUGCACGCUCGCUUUUUGCAGUGGCUCUCAAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGGCACUGA .((((((((((..(((((((....))))).))....((.((((.((.....)))))))))))))))(((((((.((((....))))..)))))))))).... ( -31.00) >consensus UUGUUUUGGGACUUGCCAUAUUUUUAUGGACCCUGUGCACGCUUGCUUUUUGCAGUGGCUCUCUAAUCGGUUAUUGGAGUGAUCCAUUUAACUGGGCGCUGA .......(((.....(((((....))))).))).((((.((((.((.....)))))).........(((((((.((((....))))..)))))))))))... (-28.66 = -28.82 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:42 2006