Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,638,539 – 20,638,652 |
Length | 113 |
Max. P | 0.549699 |
Location | 20,638,539 – 20,638,652 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.38 |
Mean single sequence MFE | -22.06 |
Consensus MFE | -16.79 |
Energy contribution | -16.10 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.18 |
Mean z-score | -1.50 |
Structure conservation index | 0.76 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20638539 113 + 22224390 UUUAAUCACGAAACAGUUCUGGAUAACGUGUUUAGUUCCAAUUAAUAAUUCACUCAUCAAGAUUUCUUGGACGUGAUUAACAUGCUACAGCAAAAGCAACUG-------UAGUCUCAAGU .(((((((((.........((((..((.......))))))................(((((....))))).)))))))))...(((((((.........)))-------))))....... ( -23.90) >DroSec_CAF1 42758 103 + 1 UUUAAUCACGAAACAGUUCUGGAUAACGUGUUUAGUUCCAACUAAUAAUUCACUCAUCAAGAUUUCUUGGACGUGAUUAACAUGCUACAGCAAAAGCAGCUG-------U---------- .(((((((((.................(((.(((((....))))).....)))...(((((....))))).)))))))))......(((((.......))))-------)---------- ( -23.00) >DroEre_CAF1 43484 120 + 1 CUUAAUCACGAAACUGUUCUGGAUAACGUGUUUAGUUCCAAUUAAUAAUUACCUCAUCAAGAUUACUUGGAAGUGGUUAACACGUUACAGCAAAAGUAACUGCAAAUCCUAAUCUCAAAU ....................((((((((((((((.((((((.((((...............)))).)))))).))...))))))))...(((........)))..))))........... ( -21.56) >DroYak_CAF1 44450 107 + 1 CCUAAUCACGAAACUCUUCUGGAUAACGUGCUUAGUUCCAAUUAGUAAAUCACUCAUCAAGAUUUCUUGGAUGUGGUUAGCAUGCUACAGCAAAAGUA-------------AUCUCAAAU .((((.((((..(..(....)..)..)))).)))).........((.((((((...(((((....)))))..)))))).)).(((....)))......-------------......... ( -19.80) >consensus CUUAAUCACGAAACAGUUCUGGAUAACGUGUUUAGUUCCAAUUAAUAAUUCACUCAUCAAGAUUUCUUGGACGUGAUUAACAUGCUACAGCAAAAGCAACUG_______U_AUCUCAAAU .(((((((((.........((((..((.......))))))................(((((....))))).)))))))))...((....))............................. (-16.79 = -16.10 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:27 2006