Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,614,585 – 20,614,687 |
Length | 102 |
Max. P | 0.878331 |
Location | 20,614,585 – 20,614,687 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 90.07 |
Mean single sequence MFE | -28.08 |
Consensus MFE | -23.04 |
Energy contribution | -22.48 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -1.73 |
Structure conservation index | 0.82 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878331 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20614585 102 + 22224390 AUCGUCGAUAUUUUUGUACCAGGUAUUCUUCUUUUUUGGGCAGGAUCUGAUCUGGAACUAGAACUGGUA------------CUGGUACAGCUAGUGUUAUUACAGCUGUCUAAC ...............(((((((...((((....(((..(((((...))).))..)))..))))))))))------------)(((.((((((.(((....)))))))))))).. ( -27.80) >DroSec_CAF1 19209 102 + 1 UUCGUUGAUAUUUUUGUACCAGGUAUUCUUAUUUUUUGGGCAGGAUCUGAUCUGGAACUAGAACUGGUA------------CUGGUACAGCUAGUAUUAUUACAGCUGUCUAAC ...............(((((((...((((....(((..(((((...))).))..)))..))))))))))------------)(((.((((((.(((....)))))))))))).. ( -28.10) >DroSim_CAF1 20 102 + 1 UUCGUUGAUAUUUUUGUACCAGGUAUUAUUAUUUUUUGGGCAGGAUCUGAUUUGGAACUAGAACUGGUA------------CUGGUACAGCUAGUGUUAUUACAGCUGUCUAAC ...............((((((((((....))).(((..(((((...))).))..)))......))))))------------)(((.((((((.(((....)))))))))))).. ( -23.80) >DroEre_CAF1 19267 102 + 1 UUCGUCGAUAUUUUCGUACCAGGUAUUCUUCUUUUUUGGGCAGGAUCUGAUCUGGAACUGGAACUGGUA------------CUGGUACAGCUAGUGUUAUUACAGCUGUCUAUA ...............(((((((...((((....(((..(((((...))).))..)))..))))))))))------------)(((.((((((.(((....)))))))))))).. ( -27.90) >DroYak_CAF1 19753 114 + 1 UUCGUCGAUAUUUUCGUACCAGGUAGACUUCUUUUUUGGGCAGGAUCUGAUCUGGAACUGGAACUGGUACUGGUACUGGUACUGGUACAGCUAGUGUUAUUACAGCUGUCUAUC .....(((.....)))..(((((((((((((((....))).))).))).)))))).((..(.((..(((....)))..)).)..))((((((.(((....)))))))))..... ( -32.80) >consensus UUCGUCGAUAUUUUUGUACCAGGUAUUCUUCUUUUUUGGGCAGGAUCUGAUCUGGAACUAGAACUGGUA____________CUGGUACAGCUAGUGUUAUUACAGCUGUCUAAC ......(((......(((((((............((..(((((...))).))..))((((....)))).............)))))))((((.(((....)))))))))).... (-23.04 = -22.48 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:13 2006