Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,586,869 – 20,586,963 |
Length | 94 |
Max. P | 0.804204 |
Location | 20,586,869 – 20,586,963 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 76.80 |
Mean single sequence MFE | -24.25 |
Consensus MFE | -15.16 |
Energy contribution | -14.50 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.32 |
Mean z-score | -1.59 |
Structure conservation index | 0.63 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20586869 94 - 22224390 CAUCCC------CACCAAUCUCUGCUCUUUAUUC---GCUUUUUGCAGGCAAUCUUAUUUUAUACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAGA .....(------((((..((((.((.........---))((((..(((.((.((((............)))))).)))..))))....)))).)))))..... ( -23.20) >DroVir_CAF1 205090 89 - 1 ---AUU------UACUUAUUUUUUUUUUGUGU-----UUUUUUUGCAGGCAAUCUUAUUUUACACACCAAGAUGGCUGUGGAAGUCUUGGGAGGGUGGCAAAA ---...------....................-----...((((((..((..(((((.(((.((((((.....)).)))).)))...)))))..)).)))))) ( -17.00) >DroPse_CAF1 190495 97 - 1 UAUGCUUUAUAUCAUCUGUGUGUGCUCUCUAUU------UUUCCGCAGGCAAUCUUAUUUUAUACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAGA ..((((.(((((.....))))).(((((((...------(((((((((.((.((((............)))))).))))))))).....)))))))))))... ( -29.20) >DroGri_CAF1 184934 97 - 1 CACACA------CACUCAUUUUGUCUAUGUAUUUAUGUUUCUUUGCAGGCAAUCUUAUUUUACACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAGA ....((------(.(((...((((((..(((............)))))))))..............(((((((..(....)..)))))))))).)))...... ( -21.50) >DroWil_CAF1 191262 91 - 1 UAUAUA------UAUCACUCUCU---UUUUUUUU---GUCUUUUGCAGGCAAUCUUAUUUUAUACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAAA ......------..((((((((.---......((---((((.....))))))..............(((((((..(....)..)))))))))))))))..... ( -24.90) >DroPer_CAF1 189913 97 - 1 UAUGCUUUAUAUCAUCUGUGGGUGCUCUCUAUU------UUUCCGCAGGCAAUCUUAUUUUAUACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAGA ..............(((...(.((((((((...------(((((((((.((.((((............)))))).))))))))).....)))))))).).))) ( -29.70) >consensus UAUACU______CACCUAUCUCUGCUCUCUAUU_____UUUUUUGCAGGCAAUCUUAUUUUAUACACCAAGAUGGCUGUGGAAAUCUUGGGAGGGUGGCAAGA ............(((((......................(((((((((.((.((((............)))))).)))))))))((....)))))))...... (-15.16 = -14.50 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:01 2006