Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,583,555 – 20,583,693 |
Length | 138 |
Max. P | 0.999894 |
Location | 20,583,555 – 20,583,653 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.20 |
Mean single sequence MFE | -31.77 |
Consensus MFE | -22.37 |
Energy contribution | -22.93 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.32 |
Mean z-score | -2.97 |
Structure conservation index | 0.70 |
SVM decision value | 3.45 |
SVM RNA-class probability | 0.999225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20583555 98 + 22224390 GU-GUCACGGAAAAAUCUAAGGCUUAAAUUUCACAUAGGGCUCUACGAAGUAUGUAGUGAAAAAAAAA---------------------UUGUUUUGGCUACAUACUUCUAGGCACCUAC ..-(((..(((....)))..)))............((((((.(((.((((((((((((.((((.....---------------------...)))).))))))))))))))))).)))). ( -31.50) >DroSec_CAF1 153353 115 + 1 GU-GUCACAGAAAAAUCUAAGGCUUCAAUUUCACCUAGGGGUCUACGAAGUAUGCAGAAUAAAACGAACACGAAUGCGAAAUAUAUAUUUUGUUUUGGCUGCAUACUUCUAGGCAC---- ((-(((.............(((((((...........)))))))..(((((((((((..(((((((((....................))))))))).)))))))))))..)))))---- ( -32.35) >DroSim_CAF1 167327 115 + 1 GU-GUCACAGAAAAAUCUAAGGCUUCAAUUUCACCUAGGGGUCUACGAAGUAUGCAGUGAAAAACGAACUCGAAUGCGAAAUAUAUAUUUUGUUUUGGCUGCAUACUUCUAGGCAC---- ((-(((.............(((((((...........)))))))..((((((((((((.(((..((....))...(((((((....)))))))))).))))))))))))..)))))---- ( -36.30) >DroEre_CAF1 147543 114 + 1 GUGGCACCAGAAAGAGCUAAGGUUUCAAAUUCACAUAGGGGUCUACAAGGUAUGCAGUGAAAAACGAACACGAAUGCGAACUAGAUA--GUAUUUUUGCUGCAUACCACUAGACAC---- .(((.(((............))).))).............(((((...(((((((((..((((.......((....)).(((....)--)).))))..)))))))))..)))))..---- ( -29.00) >DroYak_CAF1 150515 112 + 1 GU-GCCACAGCAAGAGCUAAGGUUUCAAAUUCGCAUAG-GGUCUACAAAGUAUGCAGUGAAAGACGAACUCGAGUGCGAACUAGUAU--AUGUUUAUGCUGCAUACUUCUAGACAC---- ..-(((..(((....)))..)))...............-.(((((..(((((((((((...(((((......(((....))).....--.)))))..))))))))))).)))))..---- ( -29.70) >consensus GU_GUCACAGAAAAAUCUAAGGCUUCAAUUUCACAUAGGGGUCUACGAAGUAUGCAGUGAAAAACGAACACGAAUGCGAAAUAGAUA__UUGUUUUGGCUGCAUACUUCUAGGCAC____ ...(((..(((....)))..))).................(((((.((((((((((((.((((((((......................)))))))))))))))))))))))))...... (-22.37 = -22.93 + 0.56)
Location | 20,583,594 – 20,583,693 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.99 |
Mean single sequence MFE | -33.02 |
Consensus MFE | -26.28 |
Energy contribution | -26.62 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.07 |
Mean z-score | -4.20 |
Structure conservation index | 0.80 |
SVM decision value | 4.42 |
SVM RNA-class probability | 0.999894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20583594 99 + 22224390 CUCUACGAAGUAUGUAGUGAAAAAAAAA---------------------UUGUUUUGGCUACAUACUUCUAGGCACCUACCUAUACGAGUAUAGGGAUUUUUGUGGAACCCACAUACAUA .((((.((((((((((((.((((.....---------------------...)))).))))))))))))))))......((((((....))))))......(((((...)))))...... ( -32.40) >DroSec_CAF1 153392 111 + 1 GUCUACGAAGUAUGCAGAAUAAAACGAACACGAAUGCGAAAUAUAUAUUUUGUUUUGGCUGCAUACUUCUAGGCAC----CUAUACGAGUAUAUUGAUU-UUGUGGAACCCACA----UA (((((.(((((((((((..(((((((((....................))))))))).))))))))))))))))..----...................-.(((((...)))))----.. ( -31.35) >DroSim_CAF1 167366 112 + 1 GUCUACGAAGUAUGCAGUGAAAAACGAACUCGAAUGCGAAAUAUAUAUUUUGUUUUGGCUGCAUACUUCUAGGCAC----CUAUACGAGUAUAUUGAUUUUUGUGGAACCCACA----UA (((((.((((((((((((.(((..((....))...(((((((....)))))))))).)))))))))))))))))..----.....................(((((...)))))----.. ( -35.30) >consensus GUCUACGAAGUAUGCAGUGAAAAACGAAC_CGAAUGCGAAAUAUAUAUUUUGUUUUGGCUGCAUACUUCUAGGCAC____CUAUACGAGUAUAUUGAUUUUUGUGGAACCCACA____UA (((((.(((((((((((...((((((((....................))))))))..))))))))))))))))...........................(((((...)))))...... (-26.28 = -26.62 + 0.34)
Location | 20,583,594 – 20,583,693 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.99 |
Mean single sequence MFE | -26.08 |
Consensus MFE | -22.08 |
Energy contribution | -21.97 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.31 |
Structure conservation index | 0.85 |
SVM decision value | 3.07 |
SVM RNA-class probability | 0.998338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20583594 99 - 22224390 UAUGUAUGUGGGUUCCACAAAAAUCCCUAUACUCGUAUAGGUAGGUGCCUAGAAGUAUGUAGCCAAAACAA---------------------UUUUUUUUUCACUACAUACUUCGUAGAG ...((((((((...)))).......((((((....))))))...))))((((((((((((((..((((...---------------------.....))))..))))))))))).))).. ( -27.40) >DroSec_CAF1 153392 111 - 1 UA----UGUGGGUUCCACAA-AAUCAAUAUACUCGUAUAG----GUGCCUAGAAGUAUGCAGCCAAAACAAAAUAUAUAUUUCGCAUUCGUGUUCGUUUUAUUCUGCAUACUUCGUAGAC ..----(((((...))))).-........(((.....(((----....)))(((((((((((..(((((.((((....))))(((....)))...)))))...))))))))))))))... ( -26.00) >DroSim_CAF1 167366 112 - 1 UA----UGUGGGUUCCACAAAAAUCAAUAUACUCGUAUAG----GUGCCUAGAAGUAUGCAGCCAAAACAAAAUAUAUAUUUCGCAUUCGAGUUCGUUUUUCACUGCAUACUUCGUAGAC ..----(((((...)))))..........(((.....(((----....)))(((((((((((..(((((...........((((....))))...)))))...))))))))))))))... ( -24.84) >consensus UA____UGUGGGUUCCACAAAAAUCAAUAUACUCGUAUAG____GUGCCUAGAAGUAUGCAGCCAAAACAAAAUAUAUAUUUCGCAUUCG_GUUCGUUUUUCACUGCAUACUUCGUAGAC ......(((((...)))))...............((((......))))((((((((((((((..(((((..........................)))))...))))))))))).))).. (-22.08 = -21.97 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:55 2006