Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,573,738 – 20,573,858 |
Length | 120 |
Max. P | 0.693132 |
Location | 20,573,738 – 20,573,858 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -34.87 |
Consensus MFE | -27.64 |
Energy contribution | -28.53 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.06 |
Mean z-score | -2.14 |
Structure conservation index | 0.79 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20573738 120 + 22224390 AGGCUCCAGGAUUUCGGGUACUCCUUCAAUUCGUCUAUCUUCUCUCGGUCGGCGUAGUGCUCCAUUUGCCUGACAUGGAUUUGCGCUGCUUUCUUCACCGACUUCGGCACGAAUCCACCA .((...((((.....(((((((.........((((.(((.......))).)))).)))))))......))))...((((((((.((((...((......))...)))).)))))))))). ( -33.80) >DroSec_CAF1 143507 120 + 1 AGGCUUCAGGAUUCCAGCUUCUCCUUCGCUUCGUCAAUCUCCUCUAGGUUGGCGCAGUGCUUCCAUUGCCUGACAUGGAUUUCUGCUGCUUCGUUCACCGACUUCGGCACGAUUCCACUU .(((..(((((.((((...((...........((((((((.....))))))))((((((....))))))..))..)))).)))))..)))((((...(((....))).))))........ ( -35.40) >DroSim_CAF1 157759 120 + 1 AGGCUUCAGGAUUCCAGCUUCUCCUUCGCUUCGUCAAUCUCCUCUAGGUUGGCGCAGUGCUUCCAUUGCCUGACAUGGAUUUCUGCUGCUUCGUUCACCGACUUCGGCACGAUUCCACCU .(((..(((((.((((...((...........((((((((.....))))))))((((((....))))))..))..)))).)))))..)))((((...(((....))).))))........ ( -35.40) >consensus AGGCUUCAGGAUUCCAGCUUCUCCUUCGCUUCGUCAAUCUCCUCUAGGUUGGCGCAGUGCUUCCAUUGCCUGACAUGGAUUUCUGCUGCUUCGUUCACCGACUUCGGCACGAUUCCACCU ((((...((((..........)))).((((.((((((((.......)))))))).))))........))))....((((.((.(((((..(((.....)))...))))).)).))))... (-27.64 = -28.53 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:47 2006