Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,545,882 – 20,545,982 |
Length | 100 |
Max. P | 0.621955 |
Location | 20,545,882 – 20,545,982 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 93.30 |
Mean single sequence MFE | -31.42 |
Consensus MFE | -28.22 |
Energy contribution | -27.94 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -1.18 |
Structure conservation index | 0.90 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20545882 100 + 22224390 ACUUGCCAUCAUCCUGGCUGGCACUCAUCCGCAGCCCCCGCACGUCACUUAGCUCCUCGUCAGUGAGAUCCUCCAUGGAGAUCUCCCGAGAUCUGGGCAC ...(((((((.....)).)))))..........((((..((..........))..((((...(.((((((.((....)))))))))))))....)))).. ( -27.40) >DroSec_CAF1 113475 100 + 1 ACUUGCCAUCAUCCUGGCUGGCACUCAUCCGCAGCCCCCGCACGUCGCUAAGCUCCUCGUCGGUGAGAUCCUCCAUGGAGAUCUCCCGAGAUCUGGGCAC ...(((((((.....)).)))))..........((((..((.....))........((.((((.((((((.((....))))))))))))))...)))).. ( -32.20) >DroSim_CAF1 126156 100 + 1 ACUUGCCAUCAUCCUGGCUGGCACUCAUCCGCAGCCCCCGCACGUCGCUAAGCUCCUCGUCGGUGAGAUCCUCCAUGGAGAUCUCCCGAGAUCUGGGCAC ...(((((((.....)).)))))..........((((..((.....))........((.((((.((((((.((....))))))))))))))...)))).. ( -32.20) >DroEre_CAF1 112509 100 + 1 ACUUGCCAUCAUCCUGGUUGGCACUCAUCCGCAGUCCCCGCACUUCGCUCAGCUCCUCUUCGGUGAGAUCCUCCAUGGAGAUUUCCCGAGAUUGGGGCAC ...(((((((.....)).))))).......((.......))..........(((((..(((((.((((((.((....)))))))))))))...))))).. ( -31.30) >DroYak_CAF1 115599 100 + 1 ACUUGCCAUCAUCAUGACUGGCACUCAUCCGCAGCGCACGCACUUCGCUGAGCUCCUCGUCGGUGAGGUCCUCCAUGGAGAUCUCCCGAGAUCUGGGCAC ...(((((((.....)).)))))........(((((.........))))).((((.((.((((.((((((.((....))))))))))))))...)))).. ( -34.00) >consensus ACUUGCCAUCAUCCUGGCUGGCACUCAUCCGCAGCCCCCGCACGUCGCUAAGCUCCUCGUCGGUGAGAUCCUCCAUGGAGAUCUCCCGAGAUCUGGGCAC ...(((((((.....)).))))).......((.......))..........((((.((.((((.((((((.((....))))))))))))))...)))).. (-28.22 = -27.94 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:42 2006