Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,499,043 – 20,499,134 |
Length | 91 |
Max. P | 0.537127 |
Location | 20,499,043 – 20,499,134 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 83.04 |
Mean single sequence MFE | -30.33 |
Consensus MFE | -20.86 |
Energy contribution | -21.67 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.25 |
Mean z-score | -1.67 |
Structure conservation index | 0.69 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20499043 91 + 22224390 AUUAAGGACGCACUCC--UCGGGCGGACUUAACGGAUUUCCAGCUCUAAUCUGCACAUUGUCUGCCCAUCGGA-AGUUCGAGGGCAUGUGUGUG----- .......(((((((((--((((((((((.....((....)).((........)).....))))))))..(...-.)...)))))...)))))).----- ( -34.50) >DroSec_CAF1 67341 91 + 1 AUUAAGGACGCACUCC--UCGGGCGGACUUAACGGAUUUCCAGCUCUAAUCUGCACAUUGUCUGCCCAUCGGA-AGUUCGAGGGCAUGUGUGUG----- .......(((((((((--((((((((((.....((....)).((........)).....))))))))..(...-.)...)))))...)))))).----- ( -34.50) >DroSim_CAF1 90773 91 + 1 AUUAAGGACGCACUCC--UCGGGCGGACUUAACGGAUUUCCAGCUCUAAUCUGCACAUUGUCUGCCCAUCGGA-AGUUCGAGGGCAUGUGUGUG----- .......(((((((((--((((((((((.....((....)).((........)).....))))))))..(...-.)...)))))...)))))).----- ( -34.50) >DroEre_CAF1 65865 95 + 1 AUUAAGGACGCACUCC--UCGGGCGGACUUAACGGAUUUCCAGCUCUAAUCUGCGCAUUGUCUGCCCAUCGGA-AGUUCGAGGGUCUGUGUGUGUGUG- .....(.(((((((((--((((((((((.....((....)).((.(......).))...))))))))..(...-.)...)))))...)))))).)...- ( -35.00) >DroAna_CAF1 50157 93 + 1 AUUAAGGGCGGAAUCUAUAAGGGCGGACUUAACGGAUUUUCAGCUCUAAUCUUCACAUUGUCUGUCCAUCAGA-ACUCGAAACUCGAGUGUCUG----- .....((((...........((((((((.....(((((.........))))).......))))))))......-(((((.....))))))))).----- ( -24.30) >DroPer_CAF1 88074 92 + 1 AUUAAGGGCGCAUU-------GACGGGCUUAACGGAUUUCCAGCUUUAAUCUGUACAUUGUCUGCCCAUCAAAAAACUCAAGAGCGUGUGUGUGUGUGU .......((((((.-------.(((.((((.(((((((.........)))))))...(((.........))).........)))).)))..)))))).. ( -19.20) >consensus AUUAAGGACGCACUCC__UCGGGCGGACUUAACGGAUUUCCAGCUCUAAUCUGCACAUUGUCUGCCCAUCGGA_AGUUCGAGGGCAUGUGUGUG_____ .......((((((.......((((((((....((((((.........))))))......)))))))).((((.....))))......))))))...... (-20.86 = -21.67 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:28 2006