Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,473,062 – 20,473,199 |
Length | 137 |
Max. P | 0.578952 |
Location | 20,473,062 – 20,473,163 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 85.14 |
Mean single sequence MFE | -31.20 |
Consensus MFE | -21.94 |
Energy contribution | -22.86 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.09 |
Mean z-score | -1.58 |
Structure conservation index | 0.70 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20473062 101 - 22224390 UUAGCUAUUCGCAACCGGUUUUCGCACGAAGAUCGAAAGAUCGAAUGUGAGGUUUGA------ACUUUAAGCUUUGCGGGGGGGAUCAGCAACUGAUUGAA-----CCACA------U ...(((..((.(..(((....(((((....((((....))))...)))))(((((((------...)))))))...)))..).))..)))...........-----.....------. ( -28.20) >DroSec_CAF1 46532 103 - 1 UUAGCUAUUUGCAACCGGUUUUCGCACGAAGAUCGAAAGAUCGAAU--GAGGUUUGAACUUGAACUUUAAGCUUUGCG--GGGGAUCAGCAACUGGUUGAA-----CCACA------U (((((((.((((......((..((((....((((....))))(..(--(((((((......))))))))..)..))))--..))....)))).))))))).-----.....------. ( -30.80) >DroSim_CAF1 51774 102 - 1 UUAGCUAUUUGCAACCGGUUUUCGCACGAAGAUCGAAAGAUCGAAU--GAGGUUUGAACUUGAACUUUAAGCU-UGCG--GGGGAUCAGCAACUGGUUGAA-----CCACU------U (((((((.((((......((..((((....((((....))))(..(--(((((((......))))))))..).-))))--..))....)))).))))))).-----.....------. ( -30.80) >DroEre_CAF1 44412 114 - 1 UUAGCUAUUUGCAACCGGUUUUCGCUCGGAGAUCGAAAGAUCGAAU--GAGGUUUGAUCUUGAACUUUAAGCAUUGCG--GGGGAUCAGCAACUGGUUAACUGGCUGAACAGAACUGG ...((.....))..(((((((((.((((.(((((....))))(..(--(((((((......))))))))..)..).))--)).))(((((....(.....)..)))))...))))))) ( -35.60) >DroYak_CAF1 46984 103 - 1 UUAGCUAUUUGCAACCGGUUUUUGCACGAAGAUCGAACGAUCGAGU--GAGGUUUGAACUUGAACUUUAAGCUUUGCG--GGGGAACAGCAACUGUUUGCC-----CCACA------G ...((.....))...((((((((....)))))))).........(.--.(((((((((.......)))))))))..)(--(((((((((...)))))).))-----))...------. ( -30.60) >consensus UUAGCUAUUUGCAACCGGUUUUCGCACGAAGAUCGAAAGAUCGAAU__GAGGUUUGAACUUGAACUUUAAGCUUUGCG__GGGGAUCAGCAACUGGUUGAA_____CCACA______U (((((((.((((...((((((((....))))))))...((((......(((((((......)))))))..((...))......)))).)))).))))))).................. (-21.94 = -22.86 + 0.92)
Location | 20,473,091 – 20,473,199 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 92.29 |
Mean single sequence MFE | -26.82 |
Consensus MFE | -22.30 |
Energy contribution | -22.58 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.13 |
Mean z-score | -1.32 |
Structure conservation index | 0.83 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578952 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20473091 108 - 22224390 ACGCUUCGAUUUAUGGUAAUUUUAAUUGACCACAAAUUAGCUAUUCGCAACCGGUUUUCGCACGAAGAUCGAAAGAUCGAAUGUGAGGUUUGA------ACUUUAAGCUUUGCG ....((((((((.(((((((....))).)))).......((.....))...((((((((....))))))))..)))))))).(..((((((((------...))))))))..). ( -26.70) >DroSec_CAF1 46559 112 - 1 UCGCUUCGAUUUAUGGUAAUUUUAAUUGACCACAAAUUAGCUAUUUGCAACCGGUUUUCGCACGAAGAUCGAAAGAUCGAAU--GAGGUUUGAACUUGAACUUUAAGCUUUGCG .(((((((((((.(((((((....))).)))).......((.....))...((((((((....))))))))..)))))))).--((((((((((.......))))))))))))) ( -27.30) >DroSim_CAF1 51801 111 - 1 ACGCUUCGAUUUAUGGUAAUUUUAAUUGACCACAAAUUAGCUAUUUGCAACCGGUUUUCGCACGAAGAUCGAAAGAUCGAAU--GAGGUUUGAACUUGAACUUUAAGCU-UGCG .(((((((((((.(((((((....))).)))).......((.....))...((((((((....))))))))..))))))))(--(((((((......))))))))....-.))) ( -27.10) >DroEre_CAF1 44450 112 - 1 ACGCUUUGAUUUAUGCUAAUUUUAAUUAACCACAAAUUAGCUAUUUGCAACCGGUUUUCGCUCGGAGAUCGAAAGAUCGAAU--GAGGUUUGAUCUUGAACUUUAAGCAUUGCG .(((..........((((((((...........))))))))....(((..(((((....)).))).((((....))))...(--(((((((......)))))))).)))..))) ( -27.40) >DroYak_CAF1 47011 112 - 1 ACGCUUUGAUUUAUGCUAAUUUUAAUUGACCACAAAUUAGCUAUUUGCAACCGGUUUUUGCACGAAGAUCGAACGAUCGAGU--GAGGUUUGAACUUGAACUUUAAGCUUUGCG .((.((((((((..((((((((...........))))))))....(((((.......)))))...)))))))))).....(.--.(((((((((.......)))))))))..). ( -25.60) >consensus ACGCUUCGAUUUAUGGUAAUUUUAAUUGACCACAAAUUAGCUAUUUGCAACCGGUUUUCGCACGAAGAUCGAAAGAUCGAAU__GAGGUUUGAACUUGAACUUUAAGCUUUGCG .(((((((((((...........................((.....))...((((((((....))))))))..))))))))...((((((((((.......))))))))))))) (-22.30 = -22.58 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:22 2006