Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,469,480 – 20,469,581 |
Length | 101 |
Max. P | 0.869980 |
Location | 20,469,480 – 20,469,581 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 66.71 |
Mean single sequence MFE | -37.68 |
Consensus MFE | -23.72 |
Energy contribution | -22.72 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.55 |
Mean z-score | -1.37 |
Structure conservation index | 0.63 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.869980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20469480 101 - 22224390 -------------------GGACCCGGCUGGUUGAGUGACUCACCUCCUCCAUCAGCGAGAACAUCUGUUUCAGCUUGGCGCCAGCGAAGGCUGGUGCUAAACGGGUGCGGAUCUCGCGC -------------------..(((((((((((.(((.((......))))).))))))((((.(....)))))...(((((((((((....))))))))))).)))))(((.....))).. ( -46.00) >DroVir_CAF1 64748 98 - 1 --GGC---CAAC-----------------UAGGCAGACACUAACCUCCUCCAUGAGUGAGAACAUUUGCUUGAUCUUGGCGCCGGUGAAGACCGGCGAGAGUCGCGUGCGUAUUUCGCGC --.((---(((.-----------------((((((((.......((((((...))).)))....))))))))...)))))((((((....)))))).........(((((.....))))) ( -34.00) >DroGri_CAF1 62814 104 - 1 --GUUGUUUUGCG------UU--------UGUCUUUGGACUCACCUCUUCCAUGAGUGAGAACAUUUGCUUGAUCUUGGCGCCGGUGAAGACCGGCGAGAGUCUUGUGCGAAUGUCGCGC --........(((------..--------..........(((((.((......))))))).((((((((..((.(((..(((((((....))))))).)))))....))))))))))).. ( -37.10) >DroYak_CAF1 43311 95 - 1 -------------------G------GCUGGUUGGGUGACUCACCUCCUCCAUCAGCGAGAACAUCUGUUUCAGCUUGGCGCCGGCGAAGGCGGGUGCUAAACGGGUGCGGAUCUCGCGC -------------------(------(..(((.((....)).))).)).......((((((...(((((.((.(.((((((((.((....)).)))))))).).)).))))))))))).. ( -43.70) >DroMoj_CAF1 94768 98 - 1 --GGC---UCGC-----------------AGUUUAUUGACUUACCUCCUCCAUGAGUGAGAACAUUUGCCUGAUCUUGGCGCCGGUGAAGACCGGCGAGAGUCUAGUGCGAAUUUCACGC --...---((((-----------------(.(.....(((((..((((((...))).))).......(((.......)))((((((....))))))..))))).).)))))......... ( -31.70) >DroAna_CAF1 22472 120 - 1 CCCCCCCAUCACCCAUCACCCACCCCCUUUGGCGCAUGACUCACCUCCUCCAUCAGAGAGAACAUCUGCUUGAGCUUGGCGCCCGCGAACGCGGGAUCGAGUCGCGUGCGAAUCUCGCGC ...............................((((..(((((.((..(((...((((.......))))...)))...))..(((((....)))))...)))))))))(((.....))).. ( -33.60) >consensus __G_C___U__C_________________UGUUGAGUGACUCACCUCCUCCAUCAGUGAGAACAUCUGCUUGAGCUUGGCGCCGGCGAAGACCGGCGAGAGUCGCGUGCGAAUCUCGCGC .......................................................((((((...(((((.((.......(((((((....))))))).......)).))))))))))).. (-23.72 = -22.72 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:19 2006