Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,464,806 – 20,464,914 |
Length | 108 |
Max. P | 0.740048 |
Location | 20,464,806 – 20,464,914 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 95.74 |
Mean single sequence MFE | -31.94 |
Consensus MFE | -30.98 |
Energy contribution | -30.26 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.12 |
Mean z-score | -1.14 |
Structure conservation index | 0.97 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20464806 108 + 22224390 AUGUGUAUCUCAUAGAUAUGGAUUCUGAUGCAAGUACGGUAGCCCACCGAUGUGUGCAAUUGCUUUGGCUAAUGAGGCGUUCAUGUGCAUAUCUGGGAAAUCUCGAAG ...((((((....(((.......))))))))).....(((..((((..((((((..((..(((((((.....)))))))....))..))))))))))..)))...... ( -29.40) >DroSec_CAF1 38168 108 + 1 AUGUGUAUCUCAUAGAUACGGAUUCUGAUGCAAGUACGGUAGCCCACCGAUGUGUGCAAUUGCUUUGGCUAAUGAGGCGUUCAGGCGCAUAUCUGGGAAAUCUCGAAG ((.((((((.....)))))).))..............(((..((((..(((((((((...(((((((.....))))))).....)))))))))))))..)))...... ( -31.60) >DroSim_CAF1 43277 108 + 1 AUGUGUAUCUCAUAGAUACGGAUUCUGAUGCAAGUACGGUAGCCCACCGAUGUGUGCAAUUGCUUUGGCUAAUGAGGCGUUCAGGCGCAUAUCUGGGAAAUCUCGAAG ((.((((((.....)))))).))..............(((..((((..(((((((((...(((((((.....))))))).....)))))))))))))..)))...... ( -31.60) >DroEre_CAF1 36217 108 + 1 AUGUGUAUCUCAUAGAUAUGGAUUCUGAUACAAGUAAGGUAGCCCACCGAUGUGUGCAAUUGCUUCGGCUAAUGAGGCGUUCAGGCGCAUAUCUGGGAAAUCUCGGAG ...((((((....(((.......)))))))))....((((..((((..(((((((((...(((((((.....))))))).....)))))))))))))..))))..... ( -34.50) >DroYak_CAF1 36994 108 + 1 AUGUGUAUCUCAUAGAUAUGGAUUCUGAUACAAGUACGGUAGUCCACCGAUGUGUGCGAUUGCUUUGGCUAAUGAGGCGUUCAGGCGCAUAUCUGGGAAAUCUUGGAG ........(((..((((.(((((((((.((....))))).))))))(((((((((((((.(((((((.....))))))).))..))))))))).))...))))..))) ( -32.60) >consensus AUGUGUAUCUCAUAGAUAUGGAUUCUGAUGCAAGUACGGUAGCCCACCGAUGUGUGCAAUUGCUUUGGCUAAUGAGGCGUUCAGGCGCAUAUCUGGGAAAUCUCGAAG ...((((((....(((.......))))))))).....(((..((((..(((((((((...(((((((.....))))))).....)))))))))))))..)))...... (-30.98 = -30.26 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:18 2006