Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,441,765 – 20,441,867 |
Length | 102 |
Max. P | 0.949614 |
Location | 20,441,765 – 20,441,867 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 84.70 |
Mean single sequence MFE | -28.13 |
Consensus MFE | -20.67 |
Energy contribution | -20.98 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -2.40 |
Structure conservation index | 0.73 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20441765 102 - 22224390 UUUCGUACGCUAGUUUUGUGAGCUCCACUGUACAGUUUGCAUAC----------------AUAUGUGUGCGUUUUUUGGGUGGUUCACUCUAGUUUACUUUGGGAUUUAUGAAUGCUU ....(((.(((((....((((((((((((....)))..((((((----------------....))))))........)).))))))).))))).))).................... ( -27.20) >DroSec_CAF1 15336 102 - 1 CUGCGUAUGCUAGUUUUGUGACCUCCACUGUACACUUUGCAUAC----------------AUAUGUGUGCGUUUUUUGGGUGGUUCACUCUAGUUUACUUUGGGAUUUAUGAAUGCUU ....(((.(((((....((((...(((((........(((((((----------------....))))))).......))))).)))).))))).))).................... ( -26.66) >DroEre_CAF1 13893 102 - 1 CUCCGUAUGCUAUUUUUGUGACCUCCACUGCACAGUUUGCAUGC----------------AUAUGUGUGCGUUUUUUGGGUGGUUCACUCUAGUUUACUUUGGGAUUUAUGAAUGCUU .((((((.((((.....((((...(((((.((.((..(((((((----------------....)))))))..)).))))))).))))..)))).)))....)))............. ( -24.80) >DroYak_CAF1 13617 116 - 1 --UCGUAUUCUAUUCCAGUGACCUCCACUGUGCAGCCUGCAUACAUACAUACAUAUGUACAUAUGUGUGCGUUUUUUGGGUGGUUCACUCUAGUUUACUUUGGGAUUUAUGAAUGCUU --..((((((.((((((((((...(((((........((((((((((..(((....)))..)))))))))).......))))).))))...((....)).))))))....)))))).. ( -33.86) >consensus CUUCGUAUGCUAGUUUUGUGACCUCCACUGUACAGUUUGCAUAC________________AUAUGUGUGCGUUUUUUGGGUGGUUCACUCUAGUUUACUUUGGGAUUUAUGAAUGCUU ....(((..((((....((((...(((((........(((((((....................))))))).......))))).)))).))))..))).................... (-20.67 = -20.98 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:57 2006