Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,421,157 – 20,421,276 |
Length | 119 |
Max. P | 0.908761 |
Location | 20,421,157 – 20,421,276 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.99 |
Mean single sequence MFE | -26.24 |
Consensus MFE | -25.38 |
Energy contribution | -25.38 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.97 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20421157 119 - 22224390 GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAGCCGAGGCUGACCAGCAAAACCAAAUGAAACCAAAACC-AAAGCCGACUUC (((((((((...(((........)))...).))))).........................(((((........)))))............................-...)))...... ( -25.50) >DroSec_CAF1 10359 119 - 1 GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAGCCGAGGCUGACCAGCAAAACCAAAUGAAACCAAAACC-AAAGCCGACUUC (((((((((...(((........)))...).))))).........................(((((........)))))............................-...)))...... ( -25.50) >DroAna_CAF1 11462 120 - 1 GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAUUUGGGGCUGACCAGCAAAACCAAAUGAAACCAAAACCGAAAGCCGACUUC ((((((((....(((........)))...(((..((((...))))..))).............)))))((((((.(((....)))....))))))................)))...... ( -29.00) >DroEre_CAF1 9819 119 - 1 GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAGCCGAGGCUGACCAGCAAAACCAAAUGAAACCAAAACC-AAAGCCGACUUC (((((((((...(((........)))...).))))).........................(((((........)))))............................-...)))...... ( -25.50) >DroYak_CAF1 6681 119 - 1 GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAGCCGAGGCUGACCAGCAAAACCAAAUGAAACCAAAACC-GAAGCCGACUUC (((((((((...(((........)))...).)))))....((.((................(((((........)))))...............((....))..)))-)..)))...... ( -25.70) >consensus GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAGCCGAGGCUGACCAGCAAAACCAAAUGAAACCAAAACC_AAAGCCGACUUC (((((((((...(((........)))...).))))).........................(((((........)))))................................)))...... (-25.38 = -25.38 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:42 2006