Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,406,108 – 20,406,209 |
Length | 101 |
Max. P | 0.506488 |
Location | 20,406,108 – 20,406,209 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 86.96 |
Mean single sequence MFE | -16.72 |
Consensus MFE | -11.56 |
Energy contribution | -11.36 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.17 |
Mean z-score | -1.69 |
Structure conservation index | 0.69 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20406108 101 + 22224390 GCGAAAUUAAAAUGCGCAAAAAUAACGCAUAUAAAAUAAUAAAAAAAACACACUUCAGUGCGGAAAAUGCACGAGCAGGCAUAAUUAAUUGAUG--CUGAGAG ((.........(((((.........)))))...........................(((((.....)))))..)).(((((.........)))--))..... ( -16.30) >DroSec_CAF1 98919 94 + 1 GCGAAAUUAAAAUGCGCAAAAAUAACGCAUAUAA---------AAAAACAUACUUCAGUGCGGAAAAUGCACGAGCAGACAUAAUUAAUUGAUGCGCUGAGAG ...........(((((.........)))))....---------..........(((((((((.....(((....)))..((........)).))))))))).. ( -17.70) >DroSim_CAF1 52743 94 + 1 GCGAAAUUAAAAUGCGCAAAAAUAACGCAUAUAA---------AAAAACACACUUCAGUGCGGAAAAUGCACGAGCAGACAUAAUUAAUUGAUGCGCUGAGAG ...........(((((.........)))))....---------..........(((((((((.....(((....)))..((........)).))))))))).. ( -17.70) >DroEre_CAF1 53638 88 + 1 GCGAAAUUAAAAUGCGCAAAAAUAAUGCAUAUAA-------------AUAUACUUCAGUGCGGAAAAUGCACGCGCAGACAUAAUUAAUUGGUG--CUGAAAG (((.((((((..(((((....(((.....)))..-------------..........(((((.....)))))))))).......))))))..))--)...... ( -16.60) >DroYak_CAF1 45455 88 + 1 GCGAAAUUAAUAUGCACAAAAAUAAUGCAUAUAA-------------AUAUACUUCGGGGCGGAAAAUGCACGCGCAGACAUAAUUAAUUGAUG--CUGAAAG (((..(((.(((((((.........))))))).)-------------))...(....).(((.....))).)))(((..((........)).))--)...... ( -15.30) >consensus GCGAAAUUAAAAUGCGCAAAAAUAACGCAUAUAA_________AAAAACAUACUUCAGUGCGGAAAAUGCACGAGCAGACAUAAUUAAUUGAUG__CUGAGAG ((.........(((((.........)))))...........................(((((.....)))))..))........................... (-11.56 = -11.36 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:29 2006