Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,347,158 – 20,347,262 |
Length | 104 |
Max. P | 0.814961 |
Location | 20,347,158 – 20,347,262 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 98.41 |
Mean single sequence MFE | -20.43 |
Consensus MFE | -20.43 |
Energy contribution | -20.43 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 1.00 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20347158 104 + 22224390 CACACGGACAAACAUUCUUGGUGGUGCGCAACCGCUGACACCAACACAUAUACACCGUGCACCACCCCUUAACCCAUGAGCCGCACACUUAACUCCCUU-UUUCG ....(((............((((((((((...........................)))))))))).((((.....)))))))................-..... ( -20.33) >DroSec_CAF1 15000 104 + 1 CACACGGACAAACAUUCUUGGUGGUGCGCAACCGCUGACACCAACACAUAUACACCGUGCACCACCCCUUAACCCCUGAGCCGCACACUUAACCCCCUU-UUUCG ....(((............((((((((((...........................)))))))))).((((.....)))))))................-..... ( -20.53) >DroSim_CAF1 16763 104 + 1 CACACGGACAAACAUUCUUGGUGGUGCGCAACCGCUGACACCAACACAUAUACACCGUGCACCACCCCUUAACCCCUGAGCCGCACACUUAACCCCCUU-UUUCG ....(((............((((((((((...........................)))))))))).((((.....)))))))................-..... ( -20.53) >DroEre_CAF1 11774 105 + 1 CACACGGACAAACAUUCUUGGUGGUGCGCAACCGCUGACACCAACACAUAUACACCGUGCACCACCCCUUAACCCAUGAGCCGCACACUUAACCCCCUUUUUUCG ....(((............((((((((((...........................)))))))))).((((.....)))))))...................... ( -20.33) >consensus CACACGGACAAACAUUCUUGGUGGUGCGCAACCGCUGACACCAACACAUAUACACCGUGCACCACCCCUUAACCCAUGAGCCGCACACUUAACCCCCUU_UUUCG ....(((............((((((((((...........................)))))))))).((((.....)))))))...................... (-20.43 = -20.43 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:52 2006