Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,345,415 – 20,345,629 |
Length | 214 |
Max. P | 0.937459 |
Location | 20,345,415 – 20,345,530 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -28.30 |
Energy contribution | -28.55 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.97 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.900735 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20345415 115 + 22224390 --CCACCCACCCACUUCAGUGGCACUUGCCACCGCUUUGCUGCCAUUGUCGUUCCACUUUAGAAUUAUUUGCACAAAAUCUUUCGGCGGCAGCAAGGAUUUCUCGCUACUGUGCUUC --.........(((....(((((....)))))..((((((((((...((((.....)....(((..((((.....))))..)))))))))))))))).............))).... ( -29.60) >DroSec_CAF1 13210 117 + 1 ACCCACCCACCCACUUCAGUGGCACUUGCCACCGCUUUGCUGCCAUUGUCGUUUCACUUUAGAAUUAUUUGCACAAAAUCUUUCGGCGGCAGCAAGGAUUUCUCGCUACUGUGCUUC ...........(((....(((((....)))))..((((((((((...((((.....)....(((..((((.....))))..)))))))))))))))).............))).... ( -29.60) >DroSim_CAF1 14998 116 + 1 AC-CACCCACCCACUUCAGUGGCACUUGCCACCGCUUUGCUGCCAUUGUCGUUCCACUUUAGAAUUAUUUGCACAAAAUCUUUCGGCGGCAGCAAGGAUUUCUCGCUACUGUGCUUC ..-........(((....(((((....)))))..((((((((((...((((.....)....(((..((((.....))))..)))))))))))))))).............))).... ( -29.60) >DroEre_CAF1 9932 114 + 1 ---CACCCACCCACUUCAGUGGCACUUGCCACCGCUUUGCAGCCAUUGUCGUUCCACUUUAGAAUUAUUUGCACAAAAUCUUUCGGCGGCAGCAAGGAUUUCUCGCUGCUGUGCUUC ---...............(((((....)))))......((((((...((......))....(((..((((.....))))..))))))((((((.((.....)).)))))).)))... ( -27.60) >consensus ___CACCCACCCACUUCAGUGGCACUUGCCACCGCUUUGCUGCCAUUGUCGUUCCACUUUAGAAUUAUUUGCACAAAAUCUUUCGGCGGCAGCAAGGAUUUCUCGCUACUGUGCUUC ...........(((....(((((....)))))..((((((((((...((((.....)....(((..((((.....))))..)))))))))))))))).............))).... (-28.30 = -28.55 + 0.25)
Location | 20,345,415 – 20,345,530 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -37.07 |
Consensus MFE | -35.51 |
Energy contribution | -35.13 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.06 |
Mean z-score | -2.19 |
Structure conservation index | 0.96 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20345415 115 - 22224390 GAAGCACAGUAGCGAGAAAUCCUUGCUGCCGCCGAAAGAUUUUGUGCAAAUAAUUCUAAAGUGGAACGACAAUGGCAGCAAAGCGGUGGCAAGUGCCACUGAAGUGGGUGGGUGG-- ....(((.((((((((.....))))))))((((......((((((((......((((.....))))........))).)))))(((((((....))))))).....)))).))).-- ( -37.04) >DroSec_CAF1 13210 117 - 1 GAAGCACAGUAGCGAGAAAUCCUUGCUGCCGCCGAAAGAUUUUGUGCAAAUAAUUCUAAAGUGAAACGACAAUGGCAGCAAAGCGGUGGCAAGUGCCACUGAAGUGGGUGGGUGGGU ...(((((((((((((.....))))))))...(....)....)))))......(((......)))....((.(.((..((...(((((((....)))))))...)).)).).))... ( -36.40) >DroSim_CAF1 14998 116 - 1 GAAGCACAGUAGCGAGAAAUCCUUGCUGCCGCCGAAAGAUUUUGUGCAAAUAAUUCUAAAGUGGAACGACAAUGGCAGCAAAGCGGUGGCAAGUGCCACUGAAGUGGGUGGGUG-GU ....(((.((((((((.....))))))))((((......((((((((......((((.....))))........))).)))))(((((((....))))))).....)))).)))-.. ( -37.04) >DroEre_CAF1 9932 114 - 1 GAAGCACAGCAGCGAGAAAUCCUUGCUGCCGCCGAAAGAUUUUGUGCAAAUAAUUCUAAAGUGGAACGACAAUGGCUGCAAAGCGGUGGCAAGUGCCACUGAAGUGGGUGGGUG--- ...(((((((((((((.....))))))))...(....)....)))))......((((.....))))...((.(.(((.((...(((((((....)))))))...))))).).))--- ( -37.80) >consensus GAAGCACAGUAGCGAGAAAUCCUUGCUGCCGCCGAAAGAUUUUGUGCAAAUAAUUCUAAAGUGGAACGACAAUGGCAGCAAAGCGGUGGCAAGUGCCACUGAAGUGGGUGGGUG___ ....(((.((((((((.....))))))))((((......((((((((......(((......))).........)).))))))(((((((....))))))).....)))).)))... (-35.51 = -35.13 + -0.37)
Location | 20,345,530 – 20,345,629 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.51 |
Mean single sequence MFE | -44.20 |
Consensus MFE | -33.92 |
Energy contribution | -34.70 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.10 |
Mean z-score | -1.83 |
Structure conservation index | 0.77 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20345530 99 + 22224390 UCGAGCUUCCGGCGACCGACUUGCUUCAUAAUUGUCCUUCCUCUGGCGU------AAGGGAAGGGGGGAAG---GGGGGAUGGUG------------UGGGUGGUUGGUGGGCGGCGGUG ....(((((((.(((((.(((..(.((((...(.((((((((((..(..------....)...))))))))---)).).)))).)------------..)))))))).)))).))).... ( -40.50) >DroSec_CAF1 13327 120 + 1 UCGAGCUUCCGGCGACCAACUUGCUUCAUAAUUGUCCUUCCUCCGGCGAUGGUGGAGGGGGAAGGGGGAAGGGGGGGGGCUGGUGUGUGUGGUUGAGUGGGUGGUUGGUGGGCGGCGGUG ....(((((((.((((((.((..(((((((.((.((((((((((.((....))...)))))))))).)).........((....)).))))...)))..)))))))).)))).))).... ( -44.50) >DroSim_CAF1 15114 109 + 1 UCGAGCUUCCGGCGACCAACUUGCUUCAUAAUUGUCCUUCCUCCGGCGA------AGGGGGAACGG-----GGGGGGGGCUGGUGUGGGUGGUUGAGUGGGUGGUUGGUGGGCGGCGGUG ....(((((((.((((((.((..(((((((...((((((((((((....------........)))-----)))))))))...)))).......)))..)))))))).)))).))).... ( -47.61) >consensus UCGAGCUUCCGGCGACCAACUUGCUUCAUAAUUGUCCUUCCUCCGGCGA______AGGGGGAAGGGGGAAGGGGGGGGGCUGGUGUG_GUGGUUGAGUGGGUGGUUGGUGGGCGGCGGUG ....(((.(((.(.(((((((.(((((....((.((((((((((............)))))))))).))......)))))......................))))))).).))).))). (-33.92 = -34.70 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:48 2006