Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,343,415 – 20,343,528 |
Length | 113 |
Max. P | 0.886796 |
Location | 20,343,415 – 20,343,528 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.99 |
Mean single sequence MFE | -17.14 |
Consensus MFE | -12.72 |
Energy contribution | -12.72 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.74 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20343415 113 + 22224390 UAUGAUUUGAGUUAUGGCAUUGGAAACUAAGCAACUUGCAACACAUCACCCCAUA-C------AACCAACCAACCACCAGAGGCCUACUACUACAAUAUAUUUCGCCAUAUCUCAUCAUU .((((..((((.((((((...(....)...((.....))................-.------.........................................)))))).)))))))). ( -18.30) >DroSec_CAF1 11202 110 + 1 AAUGAUUUGAGUUAUGGGAUCGGAAACUAAGCAACUUGCAACACUUCACCCCACA-CACAACCAACCAAGCAACCACCAGAGGACUACC--------AUAUUUCGCCAUAUCUCAUCAU- .((((..((((.((((((((((....)...((.....))................-.......................))((....))--------.....)).))))).))))))))- ( -16.40) >DroSim_CAF1 12725 110 + 1 AAUGAUUUGAGUUAUGGGAUCGGAAACUAAGCAACUUGCAACACUUCACCCCACA-CACAACCAACCAAGCAACCACCAGAGGACUACC--------AUAUUUCGCCAUAUCUCAUCAU- .((((..((((.((((((((((....)...((.....))................-.......................))((....))--------.....)).))))).))))))))- ( -16.40) >DroEre_CAF1 7773 91 + 1 AAUGAAAUGAGUUAUGGGAGCGGAAACUAAGCAACUUGCCACAUAUCACCCCA----A--------CAAGCAACCACCA-AGCACU-------------AUUUUGCCAUAUCUCA---AA .......((((.(((((..(((....)...((.....))..............----.--------...))......((-((....-------------..))))))))).))))---.. ( -14.50) >DroYak_CAF1 11717 99 + 1 AAUGAAAUGAGUUAUGGGAUCGGAAACUAAGCAACCUGCCACAUAGCACCCCAUAGCA--------CAACCAACCACCAAAGCACU-------------ACUUUGCCAUAUCUCAUCAUU (((((..(((((((((((...(....).........(((......))).)))))))).--------...........(((((....-------------.))))).......)))))))) ( -20.10) >consensus AAUGAUUUGAGUUAUGGGAUCGGAAACUAAGCAACUUGCAACACAUCACCCCACA_CA_____AACCAAGCAACCACCAGAGGACUAC_________AUAUUUCGCCAUAUCUCAUCAU_ .......((((.(((((....(....)...((.....))..................................................................))))).))))..... (-12.72 = -12.72 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:39 2006