Locus 8172

Sequence ID X_DroMel_CAF1
Location 20,330,111 – 20,330,206
Length 95
Max. P 0.634573
window13423

overview

Window 3

Location 20,330,111 – 20,330,206
Length 95
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 80.14
Mean single sequence MFE -23.93
Consensus MFE -12.74
Energy contribution -12.68
Covariance contribution -0.06
Combinations/Pair 1.14
Mean z-score -2.24
Structure conservation index 0.53
SVM decision value 0.21
SVM RNA-class probability 0.634573
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20330111 95 - 22224390
---UGCCCAGAACUCGUACAUACAUAUAAGCAUAUAGUAUAUGCUAUAUAGGAUUUGUAUCUGACACAUGGUAUAUGGAGCCCAUGUACAUGUACGCU
---.((.((((.....((((....(((((((((((...))))))).)))).....))))))))..(((((.(((((((...))))))))))))..)). ( -23.80)
>DroSec_CAF1 31422 90 - 1
---CGCCCAGAAUUCGUACAUA--UAUAAGCAUAUAGUAUAUGCUAUAUAGGAUUUGUAUCUGACACAUGGUAUAUGGAAGCCAUGUAC---UGCGCU
---.((.(((.....(((((..--(((((((((((...))))))).)))).....))))).....(((((((........))))))).)---)).)). ( -23.60)
>DroSim_CAF1 29714 90 - 1
---CGCCCAGAAUUCGUACAUA--UAUAAGCAUAUAGUAUAUGCCAUAUAGGAUUUGUAUCUGACACAUGGUAUAUGGAAGCCAUGUAC---UGCGCU
---.((.(((.....(((((..--((((.((((((...))))))..)))).....))))).....(((((((........))))))).)---)).)). ( -21.50)
>DroEre_CAF1 7832 84 - 1
UAUGCCAUAUACUGCGUAC-UA--CAU-GG-------CAUAUACUACAUGGGAUUUGUAUCUGGCACAUGGUAUAUGGAGCCCAUGUAC---UGCGCU
.............(((((.-((--(((-((-------(((((((((..((((((....))))..))..)))))))))....))))))).---))))). ( -26.80)
>consensus
___CGCCCAGAAUUCGUACAUA__UAUAAGCAUAUAGUAUAUGCUAUAUAGGAUUUGUAUCUGACACAUGGUAUAUGGAACCCAUGUAC___UGCGCU
...............((((((................((((((((((...((((....)))).....))))))))))(....)))))))......... (-12.74 = -12.68 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:28 2006