Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,328,374 – 20,328,468 |
Length | 94 |
Max. P | 0.555126 |
Location | 20,328,374 – 20,328,468 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.79 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -12.95 |
Energy contribution | -13.20 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.19 |
Mean z-score | -1.84 |
Structure conservation index | 0.58 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20328374 94 - 22224390 --------CCACAAAAAUCCUGCAAUC-----CCAAGAUGUGCGACACACGCGCCCUGAUCAACACCAAACAGACCAGCGAUCUGCACAGUUGUUGGAUUAUAUAUA --------.......(((((.(((((.-----...(((((((((.....)))))((((.((...........)).))).))))).....))))).)))))....... ( -19.70) >DroVir_CAF1 4828 100 - 1 CAAAUCGAAAGCAAACUCGCAACAA-------UCAACAUGUGCGACACGCGCGCCCUGAUCACCACCAAGCAGACGAACGAUCUGCACAGUUGCUGGAUCAUUUAUA .....(....)....((.(((((.(-------(((...((((((...))))))...)))).........((((((....).)))))...))))).)).......... ( -22.80) >DroPse_CAF1 17389 98 - 1 --------CCACAGGA-ACCGGGAACCAAGGACCAAAAUGUGCGACACGCGGGCUCUGAUCAACACCAAACAGACCAACGAUCUGCACAGUUGUUGGAUCAUAUAUA --------........-.....((.((((.(((.....((((((...((..((.((((............))))))..))...))))))))).)))).))....... ( -23.00) >DroEre_CAF1 6072 94 - 1 --------AUACAAAGAUCCUGGAAUC-----UCAAGAUGUGCGAUACACGCGCCCUGAUCAACACCAAACAGACCAACGAUCUGCACAGUUGUUGGAUCAUAUAUA --------.......((((..((.(((-----....)))(((((.....))))))).))))...........(((((((((.((....))))))))).))....... ( -22.70) >DroYak_CAF1 5809 94 - 1 --------AUACAAAGAUCCUGGAAUC-----CCAAGAUGUGCGACACACGCGCCCUGAUCACCACCAAACAGACCAGCGAUCUGCACAGUUGCUGGAUCAUAUAUA --------.......((((..((.(((-----....)))(((((.....))))))).))))...........(((((((((.((....))))))))).))....... ( -24.40) >DroPer_CAF1 17367 91 - 1 --------CCACAGGA-ACCAGGAAC-------CAAAAUGUGCGACACGCGGGCUCUGAUCAACACCAAACAGACCAACGAUCUGCACAGUUGUUGGAUCAUAUAUA --------......((-.((((.(((-------.....((((((...((..((.((((............))))))..))...))))))))).)))).))....... ( -22.30) >consensus ________ACACAAAAAUCCUGGAAUC_____CCAAGAUGUGCGACACACGCGCCCUGAUCAACACCAAACAGACCAACGAUCUGCACAGUUGUUGGAUCAUAUAUA .......................................(((((.....)))))..................(((((((((.((....))))))))).))....... (-12.95 = -13.20 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:27 2006