Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,267,685 – 2,267,775 |
Length | 90 |
Max. P | 0.936943 |
Location | 2,267,685 – 2,267,775 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 67.69 |
Mean single sequence MFE | -23.83 |
Consensus MFE | -9.34 |
Energy contribution | -9.34 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.25 |
Mean z-score | -2.10 |
Structure conservation index | 0.39 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.936943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2267685 90 - 22224390 GGCAAACAUUUUCAAUUAA---AGCCG-----C---CG--------AGUAUA-------UAAAUUGCA--UUUGCGGCCGCUAAAGAGCCGCAAUUAAUA-CUGAUACCGCGCUACGAC (((................---.)))(-----(---((--------.((((.-------...((((..--.((((((((......).))))))).)))).-...)))))).))...... ( -22.53) >DroPse_CAF1 25937 99 - 1 GGCGAACAUUUUCAAUUAUGAGAAACGUGAGUG---CC--------AGUAUAC-UCGCACAACUGUCA--UUUGUGGCCGCUAAAGAGCCGCAAUUAAUAGCUGAUG------UGAGAC (((.....((((((....))))))((....)))---))--------......(-(((((((.((((..--.((((((((......).)))))))...)))).)).))------)))).. ( -33.60) >DroGri_CAF1 29429 96 - 1 UGC-AACAUUUUCAAUUAA---CUUUU-----UCUCCUCUUCUUCUUCUUGU-------UAUGUUGCAUUUCUGUGGUCGCUAAAUAGCCGCAAUUAAUA-CUCAUA------UCAGAC (((-(((((...(((....---.....-----................))).-------.))))))))....((((((.........)))))).......-......------...... ( -14.21) >DroSec_CAF1 22220 90 - 1 GGCAAACAUUUUCAAUUAA---AGCCG-----C---CC--------AGUAUA-------UAAAUUGCA--UUUGCGGCCGCUAAAGAGCCGCAAUUAAUA-CUGAUACCGCGCUACGAC (((................---.)))(-----(---.(--------.((((.-------...((((..--.((((((((......).))))))).)))).-...)))).).))...... ( -20.23) >DroPer_CAF1 27026 100 - 1 GGCGAACAUUUUCAAUUAUGAGAAACGUGAGUA---CG--------AGUAUACCUCGCACAACUGUCA--UUUGUGGCCGCUAAAGAGCCGCAAUUAAUAGCUGAUG------UGAGAC ..((....((((((....))))))((....)).---))--------.......((((((((.((((..--.((((((((......).)))))))...)))).)).))------)))).. ( -28.60) >consensus GGCAAACAUUUUCAAUUAA___AAACG_____C___CC________AGUAUA_______UAAAUUGCA__UUUGUGGCCGCUAAAGAGCCGCAAUUAAUA_CUGAUA______UAAGAC .......................................................................((((((((......).)))))))......................... ( -9.34 = -9.34 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:28 2006