Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,323,070 – 20,323,170 |
Length | 100 |
Max. P | 0.798114 |
Location | 20,323,070 – 20,323,170 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 79.53 |
Mean single sequence MFE | -27.20 |
Consensus MFE | -18.36 |
Energy contribution | -18.80 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.17 |
Mean z-score | -1.85 |
Structure conservation index | 0.68 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20323070 100 + 22224390 AACCGGAUUGCUCGCAUCCUAAACUCGGCGGUUUGGCAGUUUGGCUAGUUGGCCAGUUGGCCAUUUGGCCAUUUUGCGAGCUCGUGUUAAUUAUAUAUCG ((((((...(((((((..(((((((....))))))).....(((((((.(((((....))))).)))))))...)))))))))).)))............ ( -38.30) >DroSec_CAF1 24629 84 + 1 AACCGGAUUGCUCGCAUCCUAAACUCGGCGGUUUGGCAAUUUGGCCAGUUGGCCA----------------UUUGGUGAGCUCGUGUUAAUUAUAUAUCG ((((((...((((((...(((((((....)))))))(((..(((((....)))))----------------.)))))))))))).)))............ ( -26.40) >DroSim_CAF1 21926 84 + 1 AACCGGAUUGCUCGCAUCCUAAACUCGGCGGUUUGGCAAUUUGGCCAGUUGGCCA----------------CUUGGUGAGCUCGUGUUAAUUAUAUAUCG ((((((...((((((...(((((((....)))))))(((..(((((....)))))----------------.)))))))))))).)))............ ( -25.40) >DroYak_CAF1 531 76 + 1 AACCGGAUUGUUCGAAUCCUAAACGCGACGGUGUGGCAAUUUGGCCAUUUGG------------------------CGAGUUCGUGUUAAUUAUAAAUCA ....(((((.....)))))..((((((((.(((((((......)))))...)------------------------)..).)))))))............ ( -18.70) >consensus AACCGGAUUGCUCGCAUCCUAAACUCGGCGGUUUGGCAAUUUGGCCAGUUGGCCA________________UUUGGCGAGCUCGUGUUAAUUAUAUAUCG ((((((...((((((...((((((......)))))).....(((((....)))))....................))))))))).)))............ (-18.36 = -18.80 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:25 2006