Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,274,207 – 20,274,302 |
Length | 95 |
Max. P | 0.729356 |
Location | 20,274,207 – 20,274,302 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 95.79 |
Mean single sequence MFE | -34.40 |
Consensus MFE | -33.05 |
Energy contribution | -32.83 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.71 |
Structure conservation index | 0.96 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20274207 95 + 22224390 CAGCCGAUCUCGAAGCCGGUGGCGAUCUAGAAAACGAGGUAUUCGAGGACAUAUCGGACAUUUCAGAUCCCGGCGAUCUGGAGUUCGAUGAGCAG ..((.(.((((((((((.((..(......)...))..))).))))))).).((((((((..((((((((.....)))))))))))))))).)).. ( -31.70) >DroSec_CAF1 3928 95 + 1 CGGCCGACCUCGAAGCCGGUGGCGAACUAGAAAACGAGGUGUUCGAGGACAUAUCGGACAUUUCAGAUCCCGGCGAUCUGGAGUUCGAUGAGCAG ..((...((((((((((.((..(......)...))..))).)))))))...((((((((..((((((((.....)))))))))))))))).)).. ( -34.00) >DroSim_CAF1 4231 95 + 1 AGGCCGACCUCGAAGCCGGUGGCGAACUAGAAAACGAGGUGUUCGAGGACAUAUCGGACAUUUCAGAUCCCGGCGAUCUGGAGUUCGAUGAGCCG .(((...((((((((((.((..(......)...))..))).)))))))...((((((((..((((((((.....)))))))))))))))).))). ( -37.50) >consensus CGGCCGACCUCGAAGCCGGUGGCGAACUAGAAAACGAGGUGUUCGAGGACAUAUCGGACAUUUCAGAUCCCGGCGAUCUGGAGUUCGAUGAGCAG ..((...((((((((((.((..(......)...))..))).)))))))...((((((((..((((((((.....)))))))))))))))).)).. (-33.05 = -32.83 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:09 2006