Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,269,681 – 20,269,781 |
Length | 100 |
Max. P | 0.882846 |
Location | 20,269,681 – 20,269,781 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 65.25 |
Mean single sequence MFE | -32.47 |
Consensus MFE | -19.02 |
Energy contribution | -18.80 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.16 |
Mean z-score | -1.39 |
Structure conservation index | 0.59 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20269681 100 + 22224390 -UCAAGGACGUGGCAUGGCGACAACGCGGUCGGCGUUCCAGACGGCGAGCACUUUGUUGUCGCCACAGAGCAACAGUGCCACACAGUUCACAGC-------UGCCCCG -....((..(((((((((((((((((.(.(((.((((...)))).))).)....))))))))))...(.....).))))))).((((.....))-------))..)). ( -40.00) >DroPse_CAF1 9546 96 + 1 GGCAAGGACAUGGCCUGGCGACAACUCGGUCGGCGUCCCAGACAUC-AGCAGAGUGUCGCCGCCACCAGUACACCAUUCCACC-----------CCCCGCCCCCCCCC (((..((...((((..(((((((.(((.((.(..(((...)))..)-.)).))))))))))))))...(....).........-----------))..)))....... ( -28.90) >DroPer_CAF1 9516 79 + 1 GGCAAGGACAUGGCCUGGCGACAACUCGGUCGGCGUCCCAGACAUC-AGCAGAGUGUCGCCGCCACCAAUACACCAUUCC---------------------------- (((.(((......)))(((((((.(((.((.(..(((...)))..)-.)).)))))))))))))................---------------------------- ( -28.50) >consensus GGCAAGGACAUGGCCUGGCGACAACUCGGUCGGCGUCCCAGACAUC_AGCAGAGUGUCGCCGCCACCAAUACACCAUUCCAC_____________________CCCC_ ..........((((..(((((((.(((.(((((....)).)))........))))))))))))))........................................... (-19.02 = -18.80 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:59 2006