Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,261,779 – 20,261,950 |
Length | 171 |
Max. P | 0.853588 |
Location | 20,261,779 – 20,261,892 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 77.99 |
Mean single sequence MFE | -28.77 |
Consensus MFE | -16.55 |
Energy contribution | -16.67 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.13 |
Mean z-score | -1.87 |
Structure conservation index | 0.58 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535714 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20261779 113 + 22224390 AUUCAACUGCCUGCCUAGGCAGGCAGCCUACCGUUUGGUCCUGACUUUUGGCCUUUGCUCAAGCGGGCUGACUGUAAUGAAUCCAGAAUUUUUAUUGCCAGUUAUUCAGUAGU ......((((((((....))))))))....(((((((((((........)).....)).)))))))(((((((((((((((.........))))))).)))....)))))... ( -36.90) >DroEre_CAF1 8103 92 + 1 AUUCAACUGC---------------------CAUUUGGCCCUGACUUUUGGCCUUUGCUCGAGCUGGCCGACUGUAAUGAAUCCAGCAGUUUAAUUGGCAGUUAUUCAGUAGU ....((((((---------------------((.(((............((((...((....)).))))((((((..((....))))))))))).)))))))).......... ( -27.40) >DroYak_CAF1 8582 92 + 1 AUUCAACUGC---------------------CGUUUGGCCCUGACUUUUGGCCUUUGCUGGGGCUGGCUGACUGUAAUAAAUCCAGCAUUUUUAUUUGUAGUUAUUCAGUAGU ....((((((---------------------.....((((.........))))..(((((((....((.....))......))))))).........)))))).......... ( -22.00) >consensus AUUCAACUGC_____________________CGUUUGGCCCUGACUUUUGGCCUUUGCUCGAGCUGGCUGACUGUAAUGAAUCCAGCAUUUUUAUUGGCAGUUAUUCAGUAGU .....(((((.......................................((((...((....)).))))((((((((((((.........))))))).))))).....))))) (-16.55 = -16.67 + 0.12)
Location | 20,261,812 – 20,261,922 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -22.46 |
Energy contribution | -21.90 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.22 |
Mean z-score | -1.40 |
Structure conservation index | 0.76 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20261812 110 + 22224390 UUUGGUCCUGACUUUUGGCCUUUGCUCAAGCGGGCUGACUGUAAUGAAUCCAGAAUUUUUAUUGCCAGUUAUUCAGUAGUUCCGAAGUAAUUGAAUUACGGCUU----------GCUGAU ...((.((........)))).....(((.(((((((((((((((((((.........))))))).))))).....(((((((..((....))))))))))))))----------))))). ( -28.60) >DroSec_CAF1 8529 110 + 1 UUUGGCCCUGACUUUUGGCCUUUGCUCAAGCUGGCUGACUGUAAUAAAUCCACAAUUUUUAUUGCCAGUUAUUCAGCAGUUCCGCAGUAAUUGAAUUACGGCUU----------GCUGAU ...((((.........)))).........((((..(((((((((((((.........))))))).))))))..))))(((...((.(((((...))))).))..----------)))... ( -28.30) >DroEre_CAF1 8115 120 + 1 UUUGGCCCUGACUUUUGGCCUUUGCUCGAGCUGGCCGACUGUAAUGAAUCCAGCAGUUUAAUUGGCAGUUAUUCAGUAGUUCUGAAGUAAUUGAGUUACGGUUUGCUGCUAUUUGCUGAU .(..((....((..((((((...((....)).))))))..)).........((((((..(((((.(((((((((((.....))).)))))))).....))))).))))))....))..). ( -35.60) >DroYak_CAF1 8594 110 + 1 UUUGGCCCUGACUUUUGGCCUUUGCUGGGGCUGGCUGACUGUAAUAAAUCCAGCAUUUUUAUUUGUAGUUAUUCAGUAGUUCUUAAGUAAGUGAAUUACGGUCU----------GCUGAU ...((((.........))))..(((((((....((.....))......))))))).................(((((((.......((((.....))))...))----------))))). ( -26.30) >consensus UUUGGCCCUGACUUUUGGCCUUUGCUCAAGCUGGCUGACUGUAAUAAAUCCAGAAUUUUUAUUGCCAGUUAUUCAGUAGUUCCGAAGUAAUUGAAUUACGGCUU__________GCUGAU ...((((.(((.....((((...((....)).))))((((((((((((.........))))))).)))))..)))(((((((..........)))))))))))................. (-22.46 = -21.90 + -0.56)
Location | 20,261,852 – 20,261,950 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.71 |
Mean single sequence MFE | -23.55 |
Consensus MFE | -14.91 |
Energy contribution | -13.85 |
Covariance contribution | -1.06 |
Combinations/Pair | 1.35 |
Mean z-score | -2.04 |
Structure conservation index | 0.63 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20261852 98 + 22224390 GUAAUGAAUCCAGAAUUUUUAUUGCCAGUUAUUCAGUAGUUCCGAAGUAAUUGAAUUACGGCUU----------GCUGAUAGCUGGU-AGUUCAUUUAACAACUUAAAC (((((((((.............((((((((((.((((((..(((.(((......))).))).))----------)))))))))))))-))))))))..))......... ( -24.81) >DroSec_CAF1 8569 99 + 1 GUAAUAAAUCCACAAUUUUUAUUGCCAGUUAUUCAGCAGUUCCGCAGUAAUUGAAUUACGGCUU----------GCUGAUAGCUGGCAAGUUCAUUUAACAACUUAAAC .....................(((((((((((.((((((..(((.(((......))).))).))----------))))))))))))))).................... ( -27.60) >DroEre_CAF1 8155 103 + 1 GUAAUGAAUCCAGCAGUUUAAUUGGCAGUUAUUCAGUAGUUCUGAAGUAAUUGAGUUACGGUUUGCUGCUAUUUGCUGAUGGCUGUU-AGUUCACUUAACAAAU----- .........(((.((((.....(((((((..(((((.....)))))(((((...))))).....)))))))...)))).))).((((-((.....))))))...----- ( -24.30) >DroYak_CAF1 8634 98 + 1 GUAAUAAAUCCAGCAUUUUUAUUUGUAGUUAUUCAGUAGUUCUUAAGUAAGUGAAUUACGGUCU----------GCUGAUGGCUGCU-AGUUCAUAAAACAAAUUAAAC ........................((((((((.((((((.......((((.....))))...))----------)))))))))))).-..................... ( -17.50) >consensus GUAAUAAAUCCAGAAUUUUUAUUGCCAGUUAUUCAGUAGUUCCGAAGUAAUUGAAUUACGGCUU__________GCUGAUAGCUGGU_AGUUCAUUUAACAAAUUAAAC .......................((((((((((..(((((((..........)))))))(((............)))))))))))))...................... (-14.91 = -13.85 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:53 2006