Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,246,875 – 20,246,972 |
Length | 97 |
Max. P | 0.983991 |
Location | 20,246,875 – 20,246,972 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 74.24 |
Mean single sequence MFE | -18.05 |
Consensus MFE | -12.68 |
Energy contribution | -12.55 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.21 |
Mean z-score | -2.01 |
Structure conservation index | 0.70 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20246875 97 - 22224390 AUGUACAAUGGAGAAACGGAGGGAAGUUUUGUUAUUGGUACCAAAUAGAUUUAGACGACUGAGCGAACAGUGUCUGAAUAGUAAAUAUGAGAAACGA ..(((((((((.(((((........))))).))))).)))).......((((((((.((((......)))))))))))).................. ( -20.50) >DroSec_CAF1 1709 74 - 1 -----------------------GAUUUCUGUUAUUGCUACCAAAUAGAUUUAGACAACUGAGCGAACAGUGUCUGAAUGGUAAAUGUGAGAAAAGA -----------------------..(((((..((((..(((((......((((((((.(((......))))))))))))))))))))..)))))... ( -17.90) >DroSim_CAF1 3561 74 - 1 -----------------------GAUUUCUGUUAUUGCUACCAAAUAGAUUUAGACAACUGAGCGAACAGUGUCUGAAUGGUAAAUGUGAGAAAAGA -----------------------..(((((..((((..(((((......((((((((.(((......))))))))))))))))))))..)))))... ( -17.90) >DroEre_CAF1 1682 97 - 1 AUAGGCAAUGGACAAACGAAAGGAAGUUCUGUUAUAGGUAUUCAAUAGACUUAGACGAUUGAGCGAACAGUGUCUGAAUGGUAAAUGUGAGAAAAGA .((((((.((..(...(....)...((((.(((.(((((.........)))))...))).)))))..)).))))))..................... ( -15.90) >consensus _______________________AAGUUCUGUUAUUGCUACCAAAUAGAUUUAGACAACUGAGCGAACAGUGUCUGAAUGGUAAAUGUGAGAAAAGA ..........................((((..((((..((((......((((((((.((((......))))))))))))))))))))..)))).... (-12.68 = -12.55 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:46 2006