Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,245,570 – 20,245,667 |
Length | 97 |
Max. P | 0.887513 |
Location | 20,245,570 – 20,245,667 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 81.68 |
Mean single sequence MFE | -27.22 |
Consensus MFE | -11.88 |
Energy contribution | -13.00 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.19 |
Mean z-score | -2.75 |
Structure conservation index | 0.44 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887513 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20245570 97 + 22224390 AAACGUGGCACAUACCAAUUACAUAUAAUGCAUACA------------CAAAUGCCGAAAUGCCAGGACAUUUGCCAGUGUGUGUAUGUGUGUGUGCUUUUU-UUUUGUU ......(((((((((.....((((((...((((((.------------((((((((.........)).))))))...)))))))))))))))))))))....-....... ( -28.00) >DroSec_CAF1 381 110 + 1 AAACGUGGCAAAUACCAAUUACAUAUAAUGCAUACACACACAUAUUUACAAAUGCCGAAAUGCCAGGACAUUUGCCAGUGUGCGAGUGUGUGUGUUUGCUUUUUUUUGUU ......(((((((....((((....))))((((((((.(.((((((..((((((((.........)).))))))..)))))).).))))))))))))))).......... ( -29.00) >DroSim_CAF1 1134 109 + 1 AAACGUGGCAAAUACCAAUUACACAUAAUGCAUACACACACAUAUUUACAAAUGCCGAAAUGCCAGGACAUUUGCCAGUGUGCGAGUGUGUGUGUUUGCUUU-UUUUGUU .((((.(((((((....((((....))))((((((((.(.((((((..((((((((.........)).))))))..)))))).).)))))))))))))))..-...)))) ( -29.50) >DroEre_CAF1 382 101 + 1 AAACGUGGCAAAUACCAAUUACAUAUAAUGCAUACACACACAUAUUUACCAAUGCCAAAAUGCCAGGACUUUUGUCAGCGUGU--------GUGUGCUUUUU-AUUUGUU .....(((......)))...(((.((((.((((((((((.(((........))).......((...(((....))).))))))--------))))))...))-)).))). ( -25.10) >DroYak_CAF1 2354 98 + 1 AAACGUGGCAAAUACCAAUUACAUAUAAUGCAUACACACACAUAUUUAC--------AAAUGCCAGGACUUUUGUCAGUGUGUAUG--UAUGUGUGCUUUUU--UUUGUU .....(((......)))....((((((.(((((((((((.(((......--------..)))....(((....))).)))))))))--))))))))......--...... ( -24.50) >consensus AAACGUGGCAAAUACCAAUUACAUAUAAUGCAUACACACACAUAUUUACAAAUGCCGAAAUGCCAGGACAUUUGCCAGUGUGUGAGUGUGUGUGUGCUUUUU_UUUUGUU ......((((((.......((((((((.(((((((..................((......))..((.(....))).)))))))....))))))))........)))))) (-11.88 = -13.00 + 1.12)
Location | 20,245,570 – 20,245,667 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 81.68 |
Mean single sequence MFE | -25.98 |
Consensus MFE | -12.35 |
Energy contribution | -13.83 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.10 |
Mean z-score | -2.56 |
Structure conservation index | 0.48 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.841459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20245570 97 - 22224390 AACAAAA-AAAAAGCACACACACAUACACACACUGGCAAAUGUCCUGGCAUUUCGGCAUUUG------------UGUAUGCAUUAUAUGUAAUUGGUAUGUGCCACGUUU .......-.....(((((.((.((((((((...((.(((((((....)))))).).))..))------------)))))).((((....))))..)).)))))....... ( -23.00) >DroSec_CAF1 381 110 - 1 AACAAAAAAAAGCAAACACACACACUCGCACACUGGCAAAUGUCCUGGCAUUUCGGCAUUUGUAAAUAUGUGUGUGUAUGCAUUAUAUGUAAUUGGUAUUUGCCACGUUU (((........(((.(((((((((.....(((.((.(((((((....)))))).).))..))).....))))))))).)))............((((....)))).))). ( -28.80) >DroSim_CAF1 1134 109 - 1 AACAAAA-AAAGCAAACACACACACUCGCACACUGGCAAAUGUCCUGGCAUUUCGGCAUUUGUAAAUAUGUGUGUGUAUGCAUUAUGUGUAAUUGGUAUUUGCCACGUUU .(((...-...(((.(((((((((.....(((.((.(((((((....)))))).).))..))).....))))))))).)))......)))...((((....))))..... ( -29.30) >DroEre_CAF1 382 101 - 1 AACAAAU-AAAAAGCACAC--------ACACGCUGACAAAAGUCCUGGCAUUUUGGCAUUGGUAAAUAUGUGUGUGUAUGCAUUAUAUGUAAUUGGUAUUUGCCACGUUU .(((.((-((...(((.((--------((((((((((....)))..)))......((((........)))))))))).))).)))).)))...((((....))))..... ( -23.90) >DroYak_CAF1 2354 98 - 1 AACAAA--AAAAAGCACACAUA--CAUACACACUGACAAAAGUCCUGGCAUUU--------GUAAAUAUGUGUGUGUAUGCAUUAUAUGUAAUUGGUAUUUGCCACGUUU ......--...((((...((((--((((((((...(((((.((....)).)))--------)).....)))))))))))).............((((....)))).)))) ( -24.90) >consensus AACAAAA_AAAAAGCACACACACACACACACACUGGCAAAUGUCCUGGCAUUUCGGCAUUUGUAAAUAUGUGUGUGUAUGCAUUAUAUGUAAUUGGUAUUUGCCACGUUU ...............................(((((((((((.((..((((....((((..................)))).....))))....))))))))))).)).. (-12.35 = -13.83 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:45 2006