Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,243,159 – 20,243,251 |
Length | 92 |
Max. P | 0.825870 |
Location | 20,243,159 – 20,243,251 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 76.81 |
Mean single sequence MFE | -33.30 |
Consensus MFE | -18.64 |
Energy contribution | -19.92 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.17 |
Mean z-score | -1.87 |
Structure conservation index | 0.56 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20243159 92 + 22224390 UCCGUUUGCUUCGACAAUCGGGCCAGAGAAACUCUUC---CAAGG---------AUCAGCAGAAGCUAAGUCUGGUUAAUCAGGCCCAGUUCUUGCUGCUAAAC ...((((((..(((.(((.(((((((((...)))).(---((.((---------...(((....)))...))))).......))))).))).)))..)).)))) ( -24.30) >DroPse_CAF1 2106 101 + 1 UCCGUUUGCUGCGUCAAUCCUCGCAGAGGAGCGCCUC---CAACGGUGUGCGGCAGCAGCAGAAGCUCAGUCUGGUCAACCAGGCGCAGUUCCUGCUGGUCAAU .....(((((((.....(((((...)))))(((((..---....))))))))))))((((((.((((..((((((....))))))..)))).))))))...... ( -44.80) >DroSec_CAF1 2637 92 + 1 UCCGUUUGCUCCGGCAAUCGGGCCAGAGAAACUCGUC---CAAGG---------AUCAGCAGAAGCUGAGUCUGGUUAAUCAGGCCCAGUUCUUACUGCUAAAC ((((.((((....)))).)((((.((.....)).)))---)..))---------)..(((((.(((((.((((((....)))))).)))))....))))).... ( -30.10) >DroEre_CAF1 3380 92 + 1 UCCGUUUGCUCCGGCAAUCGGGCCAGAGAAACUCUUC---CAAGG---------AUCAACAGAAGCUGAGUCUUGUUAAUCAGGCCCAGUUCUUGCUGCUAAAC ...(((((...((((((.((((((((((...))))..---((((.---------.(((........)))..)))).......))))).)...)))))).))))) ( -24.60) >DroMoj_CAF1 2032 95 + 1 UGCGUCUGCUGCGGCAAUCCGCACAGCGCAGCGCACCGGGCACAC---------AGCAGCAGCAGCUGAGCUUGGUGAAUCAGGCACAGUUCCUGCUGGUCAAC ((((.(((.(((((....))))))))))))(.((.....)).)..---------..((((((.(((((.((((((....)))))).))))).))))))...... ( -41.50) >DroAna_CAF1 2369 92 + 1 UCCGCCUGCUGAGGCAAUCGGGUCAAAGGAACUCCUC---CAAGG---------ACCAGCAGAAGCUCAGCCUGGUGAAUCAGGCUCAGUUCUUGCUUGUUAAU ...((((....)))).....((((...(((.....))---)...)---------)))((((..((((.(((((((....))))))).))))..))))....... ( -34.50) >consensus UCCGUUUGCUGCGGCAAUCGGGCCAGAGAAACUCCUC___CAAGG_________AUCAGCAGAAGCUGAGUCUGGUUAAUCAGGCCCAGUUCUUGCUGCUAAAC .(((.((((....)))).)))...................................((((((.((((..((((((....))))))..)))).))))))...... (-18.64 = -19.92 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:36 2006