Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,187,553 – 20,187,643 |
Length | 90 |
Max. P | 0.836927 |
Location | 20,187,553 – 20,187,643 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 72.40 |
Mean single sequence MFE | -24.15 |
Consensus MFE | -16.60 |
Energy contribution | -16.85 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.24 |
Mean z-score | -1.52 |
Structure conservation index | 0.69 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.836927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20187553 90 - 22224390 ACAUCCAUCCCUGGUCGUAAUCUGAGGUGGCCAACGUUAGCCACUUUGGCGAUGAGCAGCCUUUGUCCCCUUGGCAUACUGGCUGCACUG ....(((....)))((((...(..(((((((........)))))))..)..))))((((((..((((.....))))....)))))).... ( -32.40) >DroSec_CAF1 9231 76 - 1 ACAUCCAUUCCUGGUCAUAAUCUGAAGUGCCCAACGUUAGCCACUUUGGCGAUGAGCAGCCUUUGUCCCCUUGGCA-------------- ...........((.((((...(..(((((.(........).)))))..)..)))).))(((...........))).-------------- ( -17.00) >DroSim_CAF1 8823 88 - 1 ACAUCCAUCCCUGGUCAUAAUCUGAAGUGGCCAACGUUAGCCACUUUGGCGAUGAGCAGCCUUUGUCCCCUUGGCAUACU--CAGCACUG ...........((.((((...(..(((((((........)))))))..)..)))).))(((...........))).....--........ ( -24.10) >DroAna_CAF1 51431 78 - 1 AUCUCCGGCUCAAUCCGG-AACUGAAGUGGCCAACGCUAACCACUUUAGAGAUGAGCUGCCCUUAGCCAUUC-----------CGCAUUG ...(((((......))))-).(((((((((..........))))))))).((((.((((....)))))))).-----------....... ( -23.10) >consensus ACAUCCAUCCCUGGUCAUAAUCUGAAGUGGCCAACGUUAGCCACUUUGGCGAUGAGCAGCCUUUGUCCCCUUGGCA________GCACUG ..........(((.((((...((((((((((........))))))))))..)))).)))............................... (-16.60 = -16.85 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:02 2006