Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,179,090 – 20,179,206 |
Length | 116 |
Max. P | 0.652316 |
Location | 20,179,090 – 20,179,206 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.52 |
Mean single sequence MFE | -24.94 |
Consensus MFE | -24.61 |
Energy contribution | -24.23 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.04 |
Mean z-score | -1.39 |
Structure conservation index | 0.99 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20179090 116 + 22224390 UGAGCACUCCUCCUCAAUGGCACUUGAGCUCGUUCUCAUGCCAGUCAUGACUUUUGUGUCCUUAACCAGCCAUCACACACUCACACAC--ACUGG--CCCUGGCUGCGUUGCUUACACUU ((((........)))).(((((..((((......)))))))))............((((...((((((((((...((...........--..)).--...)))))).))))...)))).. ( -25.52) >DroSec_CAF1 772 120 + 1 UGAGCACUCCUCCUCAAUGGCACUUGAGCUCGUUCUCAUGCCAGUCAUGACUUUUGUGUCCUUAACCAGCCAUCAUACACACACACACAAACUAGCGCCCUGGCUGCGUUGCUUACACUC ((((........)))).(((((..((((......)))))))))............((((...((((((((((............................)))))).))))...)))).. ( -24.99) >DroSim_CAF1 197 118 + 1 UGAGCACUCCUCCUCAAUGGCACUUGAGCUCGUUCUCAUGCCAGUCAUGACUUUUGUGUCCUUAACCAGCCAUCAUACACACACACAC--ACUAGCGCCCUGGCUGCGUUGCUUACACUC ((((........)))).(((((..((((......)))))))))............((((...((((((((((................--..........)))))).))))...)))).. ( -25.07) >DroYak_CAF1 801 116 + 1 UGAGCACUCCUCCUCAAUGGCACUUGAGCUCGUUCUCAUGCCAGUCAUGACUUUUGUGUCCUUAACCAGGCAUCAUACACUCACACAC--ACAAG--CCCCGCCUGCGUUGCUUACACUC ((((........)))).(((((..((((......)))))))))............((((...(((((((((.................--.....--....))))).))))...)))).. ( -24.17) >consensus UGAGCACUCCUCCUCAAUGGCACUUGAGCUCGUUCUCAUGCCAGUCAUGACUUUUGUGUCCUUAACCAGCCAUCAUACACACACACAC__ACUAG__CCCUGGCUGCGUUGCUUACACUC ((((........)))).(((((..((((......)))))))))............((((...(((((((((..............................))))).))))...)))).. (-24.61 = -24.23 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:38 2006