Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,154,195 – 20,154,307 |
Length | 112 |
Max. P | 0.784519 |
Location | 20,154,195 – 20,154,307 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.58 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -28.60 |
Energy contribution | -28.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.26 |
Structure conservation index | 0.98 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20154195 112 - 22224390 UUCCCCCCUCCCCCCCCAGUCACAGU--------UUCCAUUCCCGAUUCUCCACAUCCACUGGCGACCCAAACGCUGGAUGGCACCUAGGUGACAGUCGCUAGCAUCCGGAGGGUCCAGA .....((((((.......((...((.--------.((.......))..))..)).....(((((((((((.....))).((.(((....))).)))))))))).....))))))...... ( -30.20) >DroSec_CAF1 9084 101 - 1 UUCC-----------CCAGUCGUAGC--------UUCCAUUGCCGAUUCUCCACAUCCACUGGCGACCCAAACGCUGGAUGGCACCUAGGUGACAGUCGCUAGCAUCCGGAGGGUCCAGA ....-----------.........((--------.......)).((((((((.......(((((((((((.....))).((.(((....))).)))))))))).....)))))))).... ( -29.10) >DroYak_CAF1 7550 109 - 1 UGUC-----------CCAGUCGCAGUUUCCCAGUUUCCAUUCCCGAUUCUCCACACUCACUGGCGACCCAAACGCUGGAUGGCACCAAGGUGACAGUCGCUAGCAUCCGGAGGGUCCAGA ....-----------.............................((((((((.......(((((((((((.....))).((.(((....))).)))))))))).....)))))))).... ( -28.60) >consensus UUCC___________CCAGUCGCAGU________UUCCAUUCCCGAUUCUCCACAUCCACUGGCGACCCAAACGCUGGAUGGCACCUAGGUGACAGUCGCUAGCAUCCGGAGGGUCCAGA ............................................((((((((.......(((((((((((.....))).((.(((....))).)))))))))).....)))))))).... (-28.60 = -28.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:26 2006