Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 330,908 – 331,027 |
Length | 119 |
Max. P | 0.602719 |
Location | 330,908 – 331,027 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.07 |
Mean single sequence MFE | -39.37 |
Consensus MFE | -25.32 |
Energy contribution | -25.55 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.41 |
Mean z-score | -1.33 |
Structure conservation index | 0.64 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 330908 119 - 22224390 -UUCAGACCUCCGCCACUGAGUGGCAGCAGUUUCUAGACCAAUGCUUCGAGUCCCUGGCCCUACUGGCCAACACCAGAGGUGCACACAUCGUUUUCGCACAGGUCUAUAACCACUGGUCA -....((((...(((((...)))))((..(((..((((((..(((..(((.......(((((.((((......))))))).)).....))).....)))..)))))).)))..)))))). ( -39.90) >DroVir_CAF1 119436 120 - 1 UAGCAAACACCGACAACGGAAUGGCAACAGUUUCUGGACCAGUGCUUCGAAUGCCUGGCCCUGCUGGCAAGCACACGCGGUGCACACAUCGUGUUUGCCCAAGUCUUUGCCCAUUGGUCC .((.((((.(((....)))..((....))))))))(((((((((...((((.((.(((((.....)))..(((.((((((((....)))))))).))).)).)).))))..))))))))) ( -42.10) >DroGri_CAF1 40586 120 - 1 UUGCAGACACCCACAACGGAGUGGCAACUGUUUCUGGACCAGUGCUUUGAGUGUCUGGCGCUGCUGGCGAGCACUCGCGGUGCACACAUCGUGUUCGCCCAGGUCUUUGCCCACUGGUCG ...((((.((((((......)))).....)).))))((((((((.....((((.....))))...((((((.((..(.((((.((((...)))).)))))..)).)))))))))))))). ( -44.50) >DroWil_CAF1 2138 120 - 1 CAGCAGAGCCCCACCACAGAAUGGCAACAAUUUUUGGAUCAAUGUUUCGAAUGUUUGGCCCUUUUGGCUAGCACUCGCGGUGCUCAUAUCGUUUUUGCACAAGUCUUUGCCCAUUGGUCG ..(((((((.((.(((.(((.((....)).))).)))..........(((.((((.((((.....)))))))).))).)).)))).....((....)).........))).......... ( -29.00) >DroMoj_CAF1 107793 118 - 1 --GCAGACGCCCACAACGGAAUGGCAACAGUUUCUGGACCAGUGCUUCGAGUGCCUGGCCCUGCUGGCGACAACACGCGGCGCCCACAUCGUCUUCGCUCAGGUCUUCGCCCACUGGUCA --.((((.((((.....))..((....)))).))))((((((((...((((.(((((((.......(((......)))((((.......))))...)).))))).))))..)))))))). ( -42.50) >DroAna_CAF1 2033 119 - 1 -UCCAGACUUCCGCCACCGAAUGGCAACAGUUCCUGGACCAAUGCUUCGAGACUUUGGCCCUCCUGGCCAAUACCCGCGGCCCCCACGUCGUCUUCGCACAAGUCUAUUCCCAUUGGUCG -..((((((...((((.....))))...)))..)))((((((((.....(((((((((((.....)))))......(((((......)))))........)))))).....)))))))). ( -38.20) >consensus _UGCAGACACCCACAACGGAAUGGCAACAGUUUCUGGACCAAUGCUUCGAGUGCCUGGCCCUGCUGGCCAGCACACGCGGUGCACACAUCGUCUUCGCACAAGUCUUUGCCCACUGGUCG ................(((((((....))..)))))((((((((...((((..(((((((.....)))........((((((....)))))).......))))..))))..)))))))). (-25.32 = -25.55 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:30 2006