Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,150,454 – 20,150,574 |
Length | 120 |
Max. P | 0.984083 |
Location | 20,150,454 – 20,150,574 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.17 |
Mean single sequence MFE | -25.30 |
Consensus MFE | -23.72 |
Energy contribution | -24.12 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.94 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984083 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20150454 120 + 22224390 AGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAACAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCACUGCCCUCCAGUU (((((..(((((....((((((..((..((((........))))..))..))))))...)))))(((((.......)))))...............(((((...))))))))))...... ( -26.10) >DroSec_CAF1 5720 120 + 1 AGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAAAAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCACUGCCCUCCAGUU ((((((........((((((((..((..((((........))))..))..))))))..(((.(((((.....))))))))...............))((((...))))))))))...... ( -24.80) >DroSim_CAF1 10762 120 + 1 AGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAACAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCACUGCCCUCCAGUU (((((..(((((....((((((..((..((((........))))..))..))))))...)))))(((((.......)))))...............(((((...))))))))))...... ( -26.10) >DroEre_CAF1 1525 120 + 1 UGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAACAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCACUGCCCUCCAGCU .((((..(((((....((((((..((..((((........))))..))..))))))...)))))(((((.......)))))...............(((((...)))))))))....... ( -25.60) >DroYak_CAF1 3623 120 + 1 UGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAACAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCCCUGCCCUCCACUU (((((((.........((((((..((..((((........))))..))..))))))......(((((.....))))))))))))...........(((.((........)).)))..... ( -23.90) >consensus AGGGUAAAACUUUAUCGUGUAAUCAUUUUAAGUUCACUUCCUUAUUAUUUUUGCACAACAAGUUGCAACAAUUGCAGUUGCCUAUGUCAUUUUCCGAGUGCUUAGCACUGCCCUCCAGUU .((((..(((((....((((((..((..((((........))))..))..))))))...)))))(((((.......)))))...............(((((...)))))))))....... (-23.72 = -24.12 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:18 2006