Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,128,175 – 20,128,281 |
Length | 106 |
Max. P | 0.996616 |
Location | 20,128,175 – 20,128,281 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 87.83 |
Mean single sequence MFE | -33.08 |
Consensus MFE | -26.61 |
Energy contribution | -27.49 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -2.95 |
Structure conservation index | 0.80 |
SVM decision value | 2.72 |
SVM RNA-class probability | 0.996616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20128175 106 - 22224390 -----GCAGCUUGCAGUUCGGAGUUCGGAGUUCGGAGUUUGGAGUUUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC -----((((((((((((((((.(((((((.((((.....)))).))))))).))))))))).......(((((..(((........)))..))))).)))))))....... ( -40.10) >DroSec_CAF1 29773 92 - 1 -----UCAGCUUCCAGUUCGGAGUUCGG--------------AGCCUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC -----.((((((.((((((((.((((((--------------...)))))).))))))))........(((((..(((........)))..))))).))))))........ ( -29.20) >DroSim_CAF1 13194 92 - 1 -----GCAGCUUCCAGUUCGGAGUUCGG--------------AGCUUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC -----(((((((.((((((((.(((((.--------------....))))).))))))))........(((((..(((........)))..))))).)))))))....... ( -29.20) >DroEre_CAF1 23963 97 - 1 AGCUCGGAGUUCGGAGUUCGGAGUUCGG--------------AGCUUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC ....(((...((.((((((.(....).)--------------))))).))..)))(((.(((((....(((((..(((........)))..))))))))))...))).... ( -31.30) >DroYak_CAF1 8932 97 - 1 AUCUCGCAGCUUGCAGUUCGGAGUUCGG--------------AGUUUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC ....(((((((((((((((((.(((((.--------------....))))).))))))))).......(((((..(((........)))..))))).))))))))...... ( -35.60) >consensus _____GCAGCUUGCAGUUCGGAGUUCGG______________AGCUUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC .....((((((((((((((((.((((((.................)))))).))))))))).......(((((..(((........)))..))))).)))))))....... (-26.61 = -27.49 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:07 2006