Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,115,980 – 20,116,214 |
Length | 234 |
Max. P | 0.897024 |
Location | 20,115,980 – 20,116,100 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -14.35 |
Consensus MFE | -13.45 |
Energy contribution | -13.45 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.05 |
Structure conservation index | 0.94 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20115980 120 - 22224390 UUACAUUUACAUUCACAUUCACAUCCACAUCAACAACAUCUUCAUGCACUUGAGUCGGCAAUAUAAAUCAAAUCAAAAGCACAAACAAGCCGCGAGUGUGUACACAAUUCAAGUAAACUC .............(((((((.........((((...(((....)))...))))(.((((.............................)))))))))))).................... ( -14.35) >DroSec_CAF1 16534 114 - 1 UUACAUUUACAUC------CGCAUCCACAUCAACAACAUCUUCAUGCACUUGAGUCGGCAAUAUAAAUCAAAUCAAAAGCACAAACAAGCCGCGAGUGUGUACACAAUUCAAGUAAACUC .............------.((((...................))))((((((((((((.............................))))...(((....))).))))))))...... ( -14.96) >DroEre_CAF1 12982 109 - 1 -----------UCCAUAUACACAAUCACAUCAACAACAUCUUCAUGCACUUGAGUCGGCAAUAUAAAUCAAAUCAAAAGCACAAACAAGCCGCGAGUGUGUACACAAUUCAAGUAAACUC -----------......((((((.((...((((...(((....)))...))))(.((((.............................))))))).)))))).................. ( -13.75) >consensus UUACAUUUACAUCCA_AU_CACAUCCACAUCAACAACAUCUUCAUGCACUUGAGUCGGCAAUAUAAAUCAAAUCAAAAGCACAAACAAGCCGCGAGUGUGUACACAAUUCAAGUAAACUC ...............................................((((((((((((.............................))))...(((....))).))))))))...... (-13.45 = -13.45 + 0.00)
Location | 20,116,100 – 20,116,214 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.35 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -14.09 |
Energy contribution | -13.77 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.19 |
Mean z-score | -1.40 |
Structure conservation index | 0.75 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20116100 114 - 22224390 CCAACAGCAGACAGAGAUCAUCAUCAUCA------UGGUGGCCCGAAAAUCGGAGCACAAGUUCUGGCCCACUCACAUCCACAUCCACAUCCAUAUCCACACUCGCACUCACACUCACAU ...........(((((..((((((....)------)))))(((((.....))).)).....)))))...................................................... ( -15.80) >DroSec_CAF1 16648 101 - 1 CCAACAGCAGACAGAGAUCAUCAUCAUCAUCAUCCUGGUGGCCCCA-AAUCGGAGCACAAGUUCUGGCCCACACACAUCCACAUCCA------UAUGCA------------CACUCACAU ......(((..(((.(((.((.......)).))))))((((.((..-....(((((....))))))).))))...............------..))).------------......... ( -16.80) >DroEre_CAF1 13091 100 - 1 CCGACACCAGACAGAGAUCAUCAUCAUCGUCGUCAUGGUGGACCCG-AACCGGAGCACAAGCUCUGGCCCACUCACAUCCACAUCCACAUGCACAUCC------------------ACA- .........(((.(((((....))).)))))(((((((((((...(-(.(((((((....))))))).....))...))))).....)))).))....------------------...- ( -23.50) >consensus CCAACAGCAGACAGAGAUCAUCAUCAUCAUC_UC_UGGUGGCCCCA_AAUCGGAGCACAAGUUCUGGCCCACUCACAUCCACAUCCACAU_CAUAUCCA____________CACUCACAU .............(((.......((((((......))))))........(((((((....)))))))....))).............................................. (-14.09 = -13.77 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:58 2006