Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,248,230 – 2,248,321 |
Length | 91 |
Max. P | 0.954873 |
Location | 2,248,230 – 2,248,321 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.20 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -18.91 |
Energy contribution | -19.22 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.90 |
Structure conservation index | 0.83 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.954873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2248230 91 + 22224390 UUGUCUCAUAAUUUACAUGAAAUUACUUCAUUUGCAGGGGCAUUCUUC-----------------------------UUGGUUCUGCGAUCAAACAAAUCGUGAGAAUGCAAAUCAGUCA ...(((((..((((..(((((.....)))))((((((((.((......-----------------------------.)).))))))))......))))..))))).............. ( -20.60) >DroSec_CAF1 11147 80 + 1 UUGUCUCAUAAUUUACAUGAAAUUACUUCAUUUGCAGGGGCAUUCUUC-----------------------------UUGGUCCUGCGAUCAAACAAAUCGUGAGAAUG----------- ...(((((..((((..(((((.....)))))((((((((.((......-----------------------------.)).))))))))......))))..)))))...----------- ( -23.40) >DroEre_CAF1 11594 91 + 1 UUGUCUCAUAAUUUACAUGAAAUUACUUCAUUUGCAGGGGCAUUAUUC-----------------------------UUGGUCCUGCGAUCAAACAAAUCGUGAGAAUGCAAAUCAGUCA ...(((((..((((..(((((.....)))))((((((((.((......-----------------------------.)).))))))))......))))..))))).............. ( -23.40) >DroYak_CAF1 12129 120 + 1 UUGUCUCAUAAUUUACAUGAAAUUACUUCAUUUGCAGGGGCAUUCUUAUCAUUCUGUUCAUUCUGGGUCUUGGGUCUUGGGUCCUGCCACCAAACAAAUCGUGAGAAUGCAAAUCAGUCA ...(((((..((((..(((((.....)))))..((((((.(...((((..((((.(......).))))..)))).....).))))))........))))..))))).............. ( -23.40) >consensus UUGUCUCAUAAUUUACAUGAAAUUACUUCAUUUGCAGGGGCAUUCUUC_____________________________UUGGUCCUGCGAUCAAACAAAUCGUGAGAAUGCAAAUCAGUCA ...(((((..((((..(((((.....)))))((((((((.((....................................)).))))))))......))))..))))).............. (-18.91 = -19.22 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:16 2006