Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,114,623 – 20,114,779 |
Length | 156 |
Max. P | 0.989698 |
Location | 20,114,623 – 20,114,743 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -28.29 |
Energy contribution | -27.97 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.11 |
Mean z-score | -1.01 |
Structure conservation index | 0.92 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786489 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20114623 120 - 22224390 UAUGUGGCGUUUAUGUAGCUGCAACGUAGAGUAAAAAGCUGCAGAUUGCCAAAUGUAAAACUCUGCAGUUUUGCUAUCAUCAUGCGAAAUCUGGGAGUCUGAUGCCGUUGAUGUCGCUCC ...((((((((.((((((((((........))).(((((((((((((((.....))))...))))))))))))))).(((((.((...........)).))))).))).))))))))... ( -33.70) >DroSec_CAF1 15271 101 - 1 UAUGUGGUGUUUAUGUAGCUGCAACGUAGAGUAAAAAGCUGCAGAUUGCCAAAUGUAAAACUCUGCAGUUUUGCUAUCAUCAUGCGAAAUCUGGGAGUCAG------------------- ....(((((....(((((((...((.....))....)))))))...)))))........(((((.(((((((((.........)))))).))))))))...------------------- ( -27.30) >DroEre_CAF1 11697 116 - 1 -GUGUGGUGUUUAUGCAGCUC---CGUAGAGUAAGAAGCUGCAGAUUGCCAAAUGUAAAACUCUGCAGUUUUGCUAUCAUUAUGCGAAAUCUGAGAGUCUGAUGCCGUUGAUGUCGCUCC -..((((((.....((.((((---....))))..(((((((((((((((.....))))...)))))))))))))...))))))((((.(((...(.((.....)))...))).))))... ( -31.10) >consensus UAUGUGGUGUUUAUGUAGCUGCAACGUAGAGUAAAAAGCUGCAGAUUGCCAAAUGUAAAACUCUGCAGUUUUGCUAUCAUCAUGCGAAAUCUGGGAGUCUGAUGCCGUUGAUGUCGCUCC ....(((((....(((((((...((.....))....)))))))...)))))........(((((.(((((((((.........)))))).))))))))...................... (-28.29 = -27.97 + -0.33)
Location | 20,114,663 – 20,114,779 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.27 |
Mean single sequence MFE | -33.63 |
Consensus MFE | -30.02 |
Energy contribution | -29.87 |
Covariance contribution | -0.15 |
Combinations/Pair | 1.16 |
Mean z-score | -2.94 |
Structure conservation index | 0.89 |
SVM decision value | 2.18 |
SVM RNA-class probability | 0.989698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20114663 116 - 22224390 GGUAUCUGUCAUCCAUUAAACACCAUAUA----UAUGUUGUAUGUGGCGUUUAUGUAGCUGCAACGUAGAGUAAAAAGCUGCAGAUUGCCAAAUGUAAAACUCUGCAGUUUUGCUAUCAU ((((...(((......(((((.(((((((----(.....)))))))).)))))(((((((...((.....))....))))))))))))))....((((((((....))))))))...... ( -33.70) >DroSec_CAF1 15292 120 - 1 GGUAUCUGUCAUCCAUUAUACACCAUAUACAUGUAUGUAGUAUGUGGUGUUUAUGUAGCUGCAACGUAGAGUAAAAAGCUGCAGAUUGCCAAAUGUAAAACUCUGCAGUUUUGCUAUCAU (((((((((....(((...(((((((((((.........)))))))))))..))).((((...((.....))....))))))))).))))....((((((((....))))))))...... ( -35.90) >DroEre_CAF1 11737 104 - 1 GGUAUCCGUCAUCCAUUGCACACUGCAU-------------GUGUGGUGUUUAUGCAGCUC---CGUAGAGUAAGAAGCUGCAGAUUGCCAAAUGUAAAACUCUGCAGUUUUGCUAUCAU ((((...(((...(((..((((.....)-------------)))..)))....(((((((.---(.........).))))))))))))))....((((((((....))))))))...... ( -31.30) >consensus GGUAUCUGUCAUCCAUUAAACACCAUAUA____UAUGU_GUAUGUGGUGUUUAUGUAGCUGCAACGUAGAGUAAAAAGCUGCAGAUUGCCAAAUGUAAAACUCUGCAGUUUUGCUAUCAU ((((...(((......((.(((((((((((.........))))))))))).))(((((((...((.....))....))))))))))))))....((((((((....))))))))...... (-30.02 = -29.87 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:56 2006