Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,103,011 – 20,103,122 |
Length | 111 |
Max. P | 0.516161 |
Location | 20,103,011 – 20,103,122 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 81.74 |
Mean single sequence MFE | -11.72 |
Consensus MFE | -11.10 |
Energy contribution | -11.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | 0.51 |
Structure conservation index | 0.95 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20103011 111 - 22224390 AACUAUCGAUUGUUAAUACUGCGAUAAUGUCUUCGAUUAACUGUAAAAUAGCAUAAUUGUGUGACCUAUAAACAUAUAAGUAAGUUCCCAUU------CCCACUCCAUUUCCCUUCA ...(((((...((....))..)))))..(((..((((((..(((......)))))))))...)))...........................------................... ( -10.90) >DroSec_CAF1 13069 96 - 1 AACUAUCGAUUGUUAAUACUGCGAUAACGUCUUCGAUUAACUGUAAAAUAGCAUAAUUGUGUGACCUAUAUACAUAUAAGUAAGUUCCCAUU------CCC---------------A ...(((((...((....))..)))))..(((..((((((..(((......)))))))))...))).....(((......)))..........------...---------------. ( -11.40) >DroEre_CAF1 10023 111 - 1 AACUAUCGAUUGUUAAUACUGCGAUAACGUCUUCGAUUAACUGUAAAAUAGCAUAAUUGUGUGACCUAC------AUAAGUAAGUUCCCACUCCCAUUCCCACUCCAGUUCCCAUCA ...(((((...((....))..)))))........(((.(((((...............(((.(((.(((------....))).)))..)))..............)))))...))). ( -12.85) >consensus AACUAUCGAUUGUUAAUACUGCGAUAACGUCUUCGAUUAACUGUAAAAUAGCAUAAUUGUGUGACCUAUA_ACAUAUAAGUAAGUUCCCAUU______CCCACUCCA_UUCCC_UCA ...(((((...((....))..)))))..(((..((((((..(((......)))))))))...))).................................................... (-11.10 = -11.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:49 2006