Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,094,480 – 20,094,600 |
Length | 120 |
Max. P | 0.621537 |
Location | 20,094,480 – 20,094,600 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.93 |
Mean single sequence MFE | -51.30 |
Consensus MFE | -39.31 |
Energy contribution | -40.53 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.06 |
Mean z-score | -2.03 |
Structure conservation index | 0.77 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20094480 120 - 22224390 GCGGGUCAGUCGAGUUGAAAAACACCUUCAUGGCCCACUGGCUUGCUGACCAUGCCCCAACAUACGCCCAACUUGGGGGGGCGGAGGCGGAUUCGGAUGCGGAUGCGGAAGUGAAGGUGG .(((.((....)).))).....(((((((((..((((.(.((...((((...((((((..(...(.(((.....))).).).)).))))...))))..)).).)).))..))))))))). ( -43.80) >DroSec_CAF1 4101 112 - 1 GCGGGUCAGUCGGGUUGAAAAACACCUUCAUGGCCCACUGGCUCGCUGACCACGCCUCCACGUA-GCCCAACUUGGGGGCGGC-AGACGGAUU------CGGAUGCGGAAGUGGAGGUGG ((((((((((.((((((((.......))))..))))))))))))))......(((((((((...-((((.......)))).((-(..((....------))..)))....))))))))). ( -56.70) >DroSim_CAF1 4226 109 - 1 GCGGGUCAGUCGGGUUGAAAAACACCUUCAUGGCCCACUGGCUCGCUGACCACGCCUCCACCUA-GCCCGACUUGGGGGCGCC-AG---GAUU------CGGAUGCGGAAGUGGAGGUGG ((((((((((.((((((((.......))))..))))))))))))))......(((((((((...-(((((((((((.....))-))---)..)------)))..))....))))))))). ( -53.40) >consensus GCGGGUCAGUCGGGUUGAAAAACACCUUCAUGGCCCACUGGCUCGCUGACCACGCCUCCACAUA_GCCCAACUUGGGGGCGCC_AG_CGGAUU______CGGAUGCGGAAGUGGAGGUGG ((((((((((.((((((((.......))))..))))))))))))))......(((((((((....((((.......))))...................((....))...))))))))). (-39.31 = -40.53 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:31 2006