Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,246,601 – 2,246,692 |
Length | 91 |
Max. P | 0.534081 |
Location | 2,246,601 – 2,246,692 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 79.86 |
Mean single sequence MFE | -21.56 |
Consensus MFE | -12.01 |
Energy contribution | -12.32 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.11 |
Mean z-score | -1.79 |
Structure conservation index | 0.56 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2246601 91 + 22224390 CGGGGAUUUGAAAUAAUGCAGCUCACUUUUUAGCCAAAAA-CCCGAAG----AAA-AAAUUAA--------------------GAAACUUGUUAUGCAGCAUGUCAAGUCGCCGAAU (((.(((((((....((((.(((........)))......-.......----...-.......--------------------......((.....)))))).))))))).)))... ( -19.80) >DroPse_CAF1 11377 113 + 1 AUGAGAUUCGAAAUAAUGCAACUCACUUUUUAACCAAAAAAGACGAAG----AAAAAAACCAAACGAAUGAAGGGAGAAGAGCGGAACUUGUUAUGCAGCAUGUCAAGUCCCCGAAU .....(((((.......((..(((.((((((.....))))))......----.......((...........)))))....))((.(((((.((((...)))).))))).))))))) ( -17.40) >DroSec_CAF1 9528 92 + 1 CGGGGAUUUGAAAUAAUGCAGCUCACUUUUUAGCCAAAAA-CCCGAGG----AAAAAAACUAA--------------------GAAACUUGUUAUGCAGCAUGUCAAGUCGCCGAAU (((.(((((((.....((((...((.(((((((.......-((...))----.......))))--------------------)))...))...)))).....))))))).)))... ( -23.14) >DroEre_CAF1 9893 92 + 1 CGGGGAUUUGAAAUAAUGCAGCUCACUUUUUAGCCAAAAA-CCCGAGG----AAAAAAACUAA--------------------GAAACUUGUUAUGCAGCAUGUCAAGUCGCCGAAU (((.(((((((.....((((...((.(((((((.......-((...))----.......))))--------------------)))...))...)))).....))))))).)))... ( -23.14) >DroYak_CAF1 10400 95 + 1 -GGGGAUUUGAAAUAAUGCAGCUCACUUUUUGGCCAAAAA-CCCGAGGCGAAAAAAAAACCAA--------------------GAAACUUGUUAUGCAGCAUGUCAAGUCGCCGAAU -((.(((((((....((((.((....(((((.(((.....-.....))).))))).....(((--------------------(...))))....)).)))).))))))).)).... ( -26.50) >DroPer_CAF1 11712 112 + 1 AUGAGAUUCGGAAUAAUGCAACUCACUUUUUAACCAAAAAAGACCAA-----AAAAAAACCAAACGAAUGAAGGGAAAAGAGCGGAACUUGUUAUGCAGCAUGUCAAGUCCCCGAAU .....((((((..........(((.((((((.....)))))).....-----.......((...........)).....))).(((.((((.((((...)))).))))))))))))) ( -19.40) >consensus CGGGGAUUUGAAAUAAUGCAGCUCACUUUUUAGCCAAAAA_CCCGAAG____AAAAAAACCAA____________________GAAACUUGUUAUGCAGCAUGUCAAGUCGCCGAAU .((.(((((((.....((((...((..((((....................................................))))..))...)))).....))))))).)).... (-12.01 = -12.32 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:14 2006