Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,068,040 – 20,068,132 |
Length | 92 |
Max. P | 0.561303 |
Location | 20,068,040 – 20,068,132 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 61.86 |
Mean single sequence MFE | -24.36 |
Consensus MFE | -6.40 |
Energy contribution | -7.64 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.17 |
Mean z-score | -2.56 |
Structure conservation index | 0.26 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20068040 92 + 22224390 CACAUAUA-----UGGCAUAAGUAGUA--GUAGAAUAGCUAUUCUAUAGCUAAUUAAGCGGCAGCACUGAUUAGCUGGCCA--ACGUGCCGCAUCAAUCAG ........-----.(((((...((((.--(((((((....))))))).)))).......((((((........))).))).--..)))))........... ( -25.00) >DroPse_CAF1 5253 82 + 1 CGCAAGUG----------CUGGUAGGUGCGGAGUAUAGAAAUACCCUAAAUA-----UCGACAA----GAUUGGCAGUCCUUUGAGUGCCUCAUCAGCCAC .....(.(----------((((((((..(((.((((....))))))......-----((((...----(((.....)))..)))))..))).))))))).. ( -22.30) >DroSec_CAF1 5574 80 + 1 AACAUAUA-----UAGCAUUUGUAGUA--GGAGAAUAGCUAUUCUCUAGCUAAUUAAGCGGCAGCACUG--------------ACGUGCUGCAGCAAUCAG ........-----.........((((.--(((((((....))))))).)))).....((.(((((((..--------------..))))))).))...... ( -26.60) >DroSim_CAF1 4280 80 + 1 AACAUAUA-----UAGCAUUUGUAGUA--GCAGAAUAGCUAUUCUCUAGCUAAUUAAGCGGCAGCACUG--------------ACGUGCUGCAGCAAUCAG ........-----((((....(.((((--((......)))))))....)))).....((.(((((((..--------------..))))))).))...... ( -25.30) >DroYak_CAF1 5596 89 + 1 AACAUUUAUAAUAUAACAUUUGUAGU----------AGCUAUUCUCUAGCUAAUUAGGCGGCAGCACUGAUUAGUAAGCCA--ACUGGCCGUAGCAAUCAG .....((((((........)))))).----------.(((((......(((((((((((....)).)))))))))..(((.--...))).)))))...... ( -22.60) >consensus AACAUAUA_____UAGCAUUUGUAGUA__GGAGAAUAGCUAUUCUCUAGCUAAUUAAGCGGCAGCACUGAUU_G____CC___ACGUGCCGCAGCAAUCAG ...................................((((((.....)))))).....((((((.......................))))))......... ( -6.40 = -7.64 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:17 2006