Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,031,541 – 20,031,661 |
Length | 120 |
Max. P | 0.788111 |
Location | 20,031,541 – 20,031,661 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.54 |
Mean single sequence MFE | -31.38 |
Consensus MFE | -24.20 |
Energy contribution | -23.32 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.30 |
Mean z-score | -0.78 |
Structure conservation index | 0.77 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20031541 120 + 22224390 CUCAACUACCAGUUAACUAUAUCGUCCUAGACCUCAUCGCUCUGGUUCAUCUUGAUCUCGCUAAGAUGGGUGUUGAACCGCGACCAUUCGUCGCGCGAUGGCUGCGCCAGGUUCUCGGCC .........((((..........(((...)))..((((((...((((((.(((.((((.....)))).)).).))))))(((((.....))))))))))))))).(((........))). ( -34.90) >DroGri_CAF1 2649 96 + 1 ------------------------GUUUAGACCUCGUCGUUUUGGUUCAUCUUGAGCUCAUUGAGUGUCGCAUUGAAUCGCGACCAUUCAUCGCGCGACGGCAGCGCCAGAUGCUCAGCC ------------------------.....((((..........))))....((((((((..((((((((((........)))).))))))..((((.......))))..)).)))))).. ( -28.90) >DroSec_CAF1 3403 120 + 1 AUCAACUACCAGUUAACCAUAUCGUCCUAGACCUCGUCGCUCUGGUUCAUCUUGAUCUCGCUAAGAUGGGUGUUGAACCGCGACCAUUCGUCGCGCGAUGGCUGCGCCAGAUUCUCGGCC .........((((..........(((...)))..((((((...((((((.(((.((((.....)))).)).).))))))(((((.....))))))))))))))).(((........))). ( -34.50) >DroWil_CAF1 3160 100 + 1 --------------------UUCGCCCUAGACCUCAUCGCUCUGGUUCAUCUUGAGCUCACUGAGCGUCGUAUUGAAUCGCGACCAUUCAUCGCGCGACGGUAGCGCCAAAUGCUCGGCA --------------------...(((....(((...((((...((((((...(((((((...)))).)))...))))))((((.......)))))))).)))((((.....)))).))). ( -30.90) >DroMoj_CAF1 3585 96 + 1 ------------------------GCUUAGACCUCAUCGUUCUGAUUCAUUUUGAGCUCAUUGAGUGUCGCAUUGAAUCGCGACCAUUCAUCGCGCGAUGGCAACGCCAAGUGCUCAGCC ------------------------(((((((....(((.....)))....)))))))....((((((((((........)))).))))))..((((..((((...)))).))))...... ( -27.70) >consensus _____________________UCGGCCUAGACCUCAUCGCUCUGGUUCAUCUUGAGCUCACUGAGAGUCGUAUUGAAUCGCGACCAUUCAUCGCGCGAUGGCAGCGCCAGAUGCUCGGCC .................................(((((((...((((((......(((.....))).......))))))((((.......)))))))))))....(((........))). (-24.20 = -23.32 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:00 2006