Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,958,409 – 19,958,607 |
Length | 198 |
Max. P | 0.938088 |
Location | 19,958,409 – 19,958,517 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 77.85 |
Mean single sequence MFE | -24.26 |
Consensus MFE | -8.22 |
Energy contribution | -7.82 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.12 |
Mean z-score | -2.34 |
Structure conservation index | 0.34 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19958409 108 - 22224390 AAACAAAUUAUUAUAAAGAUAUACACGAAAAUAUGUAUGUAUAUUUUUAU------AUGUAAGCUGGG-GGAGUAUCUGCCAUCAAUGUGGAGCCUCUGCCUGCAUCCUGGAUUC .......((((((((((((((((((............)))))))))))))------).))))((.((.-((((..((..(.......)..))..)))).)).))........... ( -27.70) >DroSec_CAF1 70790 105 - 1 AAACAAAUUAUUAUAAAGAUAUACACGAAAAUAUG----UAUAUUUUUAU------AUGUAAGCCGGGGGGAGUAUCUGCCAUCAAUGUGGAGCCUCUGCCUGCAUCCUGGAUAC .......((((((((((((((((((........))----)))))))))))------).))))((.(((.((((..((..(.......)..))..)))).)))))........... ( -28.90) >DroSim_CAF1 60107 85 - 1 AAACAAAUUAUUAUAAAGAUAUACACGAAAAUAUG----UAUAUUUUUAU------AUGUAAGCCGGGGGGAGUAUCU--------------------GCCUGCAUCCUGGAUAC .......((((((((((((((((((........))----)))))))))))------).)))).(((((((.((.....--------------------..)).).)))))).... ( -21.40) >DroEre_CAF1 57101 83 - 1 AAACAAAUUAUUAUAAAGAUACACACGAAAAUAUG----UAUAUUUUUG-------AUGUUAGCCGGU-GGAGUAUCUACCAUCGAUGUG--------------------GAUUC .....................((((((((((((..----..))))))))-------........((((-((........)))))).))))--------------------..... ( -15.60) >DroYak_CAF1 60095 110 - 1 AAACAAAUUAUUAUAAAGAUAUACACGAAAAUAUG----UAUAUUUUUAUACGACUACCUAAGCUGGG-GGAGUAUCUGCCAUCGAUGUGGAGCCACUGCCUGCAUCCUGGAUUC ...........((((((((((((((........))----))))))))))))..(((.(((......))-).))).....(((..((((..(.((....)))..)))).))).... ( -27.70) >consensus AAACAAAUUAUUAUAAAGAUAUACACGAAAAUAUG____UAUAUUUUUAU______AUGUAAGCCGGG_GGAGUAUCUGCCAUCAAUGUGGAGCC_CUGCCUGCAUCCUGGAUUC ................((((((....(((((((((....)))))))))...............((....)).))))))..................................... ( -8.22 = -7.82 + -0.40)
Location | 19,958,517 – 19,958,607 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 93.22 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -26.04 |
Energy contribution | -26.52 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -1.35 |
Structure conservation index | 0.88 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.800700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19958517 90 - 22224390 CGGCAGGACCCUCCCAUCCUUCCACUUCUCCAUCAAUGCUGUCCUUGGCUGUGCCUUAGUUAAAUGUGCCCCGGGGAGAGUUUUGCUGGC .((.((((........)))).))......(((.(((.(((.(((((((..(..(.((.....)).)..).))))))).))).))).))). ( -28.00) >DroSec_CAF1 70895 90 - 1 CGGCAGGACCCUCCCAUCCUUCCAGCUCUCCAUCAAUGCUGUCCUUGGCUGUGCUUUAGUUAAAUGUGCCCCGGGGAGAGUUUUGCUGGC (((((((((.(((((.......((((...........))))...(((((((.....)))))))..........))))).))))))))).. ( -30.60) >DroSim_CAF1 60192 90 - 1 CGGCAGGACCCUCCCAUCCUUCCAGCUCUCCAUCAAUGCUGUCCUUGGCUGUGCUUUAGUUAAAUGUGCCCCGGGGAGAGUUUUGCUGGC (((((((((.(((((.......((((...........))))...(((((((.....)))))))..........))))).))))))))).. ( -30.60) >DroEre_CAF1 57184 90 - 1 CGGCAGGACCCUGCCACCCACCCACUUCUCCAUCAAUGCUGUCCUCGGCUGUGCUUUAGUUAAAUGUGCCCCGGGGAGAGUUUAGCUGGC .(((((....)))))..............(((.(...(((.(((((((..(..(...........)..).))))))).)))...).))). ( -31.10) >DroYak_CAF1 60205 90 - 1 CGGCAGGACUCGCCCAUCCCCUCACUUCACCAUCAAUGCUGUCCUUGGCUGUGCUUUAGUUAAAUGUGCCCCGGGGAGAGUUUUGCUGGC (((((((((((.....(((((.(((..((.((....)).))...(((((((.....)))))))..)))....)))))))))))))))).. ( -27.20) >consensus CGGCAGGACCCUCCCAUCCUUCCACUUCUCCAUCAAUGCUGUCCUUGGCUGUGCUUUAGUUAAAUGUGCCCCGGGGAGAGUUUUGCUGGC .((.((((........)))).))......(((.(((.(((.(((((((..(..(...........)..).))))))).))).))).))). (-26.04 = -26.52 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:40 2006