Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,954,558 – 19,954,676 |
Length | 118 |
Max. P | 0.891061 |
Location | 19,954,558 – 19,954,676 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 98.31 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -27.52 |
Energy contribution | -27.92 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.93 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.891061 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19954558 118 - 22224390 GAAGAA-AACAGGUGGAAAAAUACGGCAAAGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAUUUCAUUCCUUCUUUUUCCU ...(((-((.(((.((((.....((((.....(((((.....((((....)))))))))....))))...(((((.((((((.....)))))))))))......)))).)))))))).. ( -29.00) >DroSec_CAF1 67062 118 - 1 GAAGAA-AACAGGUGGAAAAAUACGGCAAAGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAUUUCUUUCCUUCUUUUUCCU ...(((-((.(((.(((((....((((.....(((((.....((((....)))))))))....))))...(((((.((((((.....))))))))))).....))))).)))))))).. ( -29.70) >DroSim_CAF1 56444 118 - 1 GAAGAA-AACAGGUGGAAAAAUACGGCAAAGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAUUUCUUUCCUUCUUUUUCCU ...(((-((.(((.(((((....((((.....(((((.....((((....)))))))))....))))...(((((.((((((.....))))))))))).....))))).)))))))).. ( -29.70) >DroEre_CAF1 53815 117 - 1 GAAGAAAAACAGGUGGAAAAAUGCGGCA-AGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAU-UCUUUCCUUCUUUUUCCU ((((((.(((((((....((..((((((-.(((.....)))))))))..)).)))))))((.((..(((((((((.((((((.....))))))))))).)-)))..)).)))))))).. ( -30.00) >DroYak_CAF1 56165 118 - 1 GAAGAA-AACAGGUGGAAAAAUACGGCAAAGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAUUUCUUUCCUUCUUUUUCCU ...(((-((.(((.(((((....((((.....(((((.....((((....)))))))))....))))...(((((.((((((.....))))))))))).....))))).)))))))).. ( -29.70) >consensus GAAGAA_AACAGGUGGAAAAAUACGGCAAAGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAUUUCUUUCCUUCUUUUUCCU ((((((....(((.(((((....((((.....(((((.....((((....)))))))))....))))...(((((.((((((.....))))))))))).)))))..)))..)))))).. (-27.52 = -27.92 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:37 2006