Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,951,927 – 19,952,042 |
Length | 115 |
Max. P | 0.946069 |
Location | 19,951,927 – 19,952,017 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 89.81 |
Mean single sequence MFE | -23.03 |
Consensus MFE | -17.76 |
Energy contribution | -19.07 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.05 |
Mean z-score | -2.46 |
Structure conservation index | 0.77 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19951927 90 - 22224390 GUUCUCAGAUUCAAUUUGUUAACCACUAACAAACACGGCGGCUCUUAAUGGCGGACACGCCAUAAAUCCUGCCACCAGGUACUUCCGCCA ..............(((((((.....)))))))...(((((......((((((....))))))....((((....)))).....))))). ( -26.70) >DroSec_CAF1 64221 89 - 1 GUUCUCGGAUUCAAUUUGUUAACCACUAACAAACACGGCGGCUCCUACUGGCGGACACGCCAUAAAUCCUGCCACCAGGUACU-CCGCCA ..............(((((((.....)))))))...(((((..(((..((((((..............))))))..)))....-))))). ( -25.44) >DroEre_CAF1 51395 90 - 1 GUUCUGGAAUUCAAUUUGUUAGCCACCCACAAACAAGGUCGCUCUCAGUGGCGGACACGCCAUAAAUCCCGCCACCAGGUACUUCCGCCA (((((((.........((..(((.(((.........))).)))..))((((((....))))))...........))))).))........ ( -23.10) >DroYak_CAF1 53987 90 - 1 GUUCUUGAAUUCAAUUUGUUAACCACUAACAAACACGACCGCUCUCACUGGCGGACACGCCAUAAAUCCUGCCACCAGGUAAUUCCGCCA ..............(((((((.....)))))))................((((((...(((................)))...)))))). ( -16.89) >consensus GUUCUCGAAUUCAAUUUGUUAACCACUAACAAACACGGCCGCUCUCACUGGCGGACACGCCAUAAAUCCUGCCACCAGGUACUUCCGCCA ..............(((((((.....)))))))...(((((.......(((((....))))).......((((....))))...))))). (-17.76 = -19.07 + 1.31)
Location | 19,951,937 – 19,952,042 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -23.84 |
Energy contribution | -23.90 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.21 |
Mean z-score | -1.89 |
Structure conservation index | 0.93 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946069 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19951937 105 - 22224390 CAAAGUUCGCAGAUUAAUUUGAAUAGUUCUCAGAUUCAAUUUGUUAACCACUAACAAACACGGCGGCUCUUAAUGGCGGACACGCCAUAAAUCCUGCCACCAGGU ....(((.((((((((((((((.......))))))).))))))).))).............((.(((.....((((((....)))))).......))).)).... ( -29.20) >DroSec_CAF1 64230 105 - 1 CAAAGUUCGCAGAUUAAUUUGAAUAGUUCUCGGAUUCAAUUUGUUAACCACUAACAAACACGGCGGCUCCUACUGGCGGACACGCCAUAAAUCCUGCCACCAGGU ....(((.((((((((((((((.......))))))).))))))).))).............((.(((......(((((....)))))........))).)).... ( -27.14) >DroEre_CAF1 51405 105 - 1 CAAAGUUCGCAGAUUAAUUUCAAUAGUUCUGGAAUUCAAUUUGUUAGCCACCCACAAACAAGGUCGCUCUCAGUGGCGGACACGCCAUAAAUCCCGCCACCAGGU ....(((.((((((((((((((.......))))))).))))))).))).............(((.((.....((((((....)))))).......)).))).... ( -25.50) >DroYak_CAF1 53997 105 - 1 CAAAGUUCGCAGAUUAAUUUGAAUAGUUCUUGAAUUCAAUUUGUUAACCACUAACAAACACGACCGCUCUCACUGGCGGACACGCCAUAAAUCCUGCCACCAGGU ....(((.(((((((((((..(.......)..)))).))))))).))).........................(((((....))))).....((((....)))). ( -20.30) >consensus CAAAGUUCGCAGAUUAAUUUGAAUAGUUCUCGAAUUCAAUUUGUUAACCACUAACAAACACGGCCGCUCUCACUGGCGGACACGCCAUAAAUCCUGCCACCAGGU ....(((.((((((((((((((.......))))))).))))))).))).............((.(((.....((((((....)))))).......))).)).... (-23.84 = -23.90 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:33 2006