Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,938,857 – 19,938,960 |
Length | 103 |
Max. P | 0.877567 |
Location | 19,938,857 – 19,938,960 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 86.23 |
Mean single sequence MFE | -36.10 |
Consensus MFE | -21.90 |
Energy contribution | -22.65 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -3.42 |
Structure conservation index | 0.61 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19938857 103 - 22224390 AAGCAGAAGC------UGAAGCAGAAGCUAAA-GCAGAAUCUGAAGCAAAAGGUCCCUCAAAGGCGGCUAGAAAAAGUUGCACUGCCUUUGGCUUUGUGGCGGCAGCUUU .....(((((------((..((.(((((((((-((((.((((........)))).........((((((......)))))).))).))))))))))...))..))))))) ( -37.30) >DroSim_CAF1 44653 110 - 1 AAGCAGAAGCUGAAGCUGAAGCAGAAGCUAAAGGCAGAAGCUGAAGCAGAAGGUCCCUCAAAGGCGGCUAGAAAAAGUUGCACUGCCUUUGGCUUUGUGGCGGCAGCUUU .(((....)))(((((((..((.((((((((((((((..((....))................((((((......)))))).))))))))))))))...))..))))))) ( -46.90) >DroEre_CAF1 42247 103 - 1 AAGCAGAAGC------AAAAGCAGAAUCAGCA-GCAGAAGCUGAAGCAAAAGGUCCCUCAAAGGCGGCUAGAAAAAGUUGCACUGCCUUUGGCUUUGUGGCGGCAGCUUU ((((.(..((------.(((((.(..(((((.-......)))))..)...........(((((((((...((.....))...))))))))))))))...))..).)))). ( -30.80) >DroYak_CAF1 43888 91 - 1 AAGCUGAAGC------AAAAGCA-------------GAAGCUGAAGCAAAAGGUCCCUCAAAGGGGGCUAGAAAAAGUUGCACUGCCUUUGGCUUUGUGGGGGCAGCUUU ((((((..((------...(((.-------------...)))...)).......((((((...(((((((((...((.....))...))))))))).)))))))))))). ( -29.40) >consensus AAGCAGAAGC______AAAAGCAGAAGCUAAA_GCAGAAGCUGAAGCAAAAGGUCCCUCAAAGGCGGCUAGAAAAAGUUGCACUGCCUUUGGCUUUGUGGCGGCAGCUUU ....................................(((((((..((..(((((....(((((((((...((.....))...))))))))))))))...))..))))))) (-21.90 = -22.65 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:23 2006