Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,890,746 – 19,890,846 |
Length | 100 |
Max. P | 0.575204 |
Location | 19,890,746 – 19,890,846 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -36.36 |
Consensus MFE | -24.98 |
Energy contribution | -25.74 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.13 |
Mean z-score | -1.59 |
Structure conservation index | 0.69 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19890746 100 + 22224390 --UGAAUACUUUCGUUUGGUGGGUUCUUGG---CUGCACCUGUUGAUCGCCUGCAGGUCCUGCGGGCU-UGGCCUUG-GGCAACAGGUGACUCCAGUCGGAAGAGCA --......((((((.((((.((((.....)---)).((((((((....((((((((...)))))))).-..(((...-))))))))))).).)))).)))))).... ( -40.80) >DroSec_CAF1 5835 91 + 1 --GGAAUACUUUCAGUUGGCGCAUUCUUGG---CUGCACCUGUUGAUCGCCUGCAGGUCCUGCGGGCUUUGGCCUUG-GGCAACAGGUGACUCCAGU---------- --(((.......((((..(.......)..)---)))((((((((....((((((((...))))))))....(((...-)))))))))))..)))...---------- ( -36.00) >DroSim_CAF1 5296 91 + 1 --GGAAUACUUUCAGUUGGCGCAUUCUUGG---CUGCACCUGUUGAUCGCCUGCAGGUCCUGCGGGCUUUGGCCUUG-GGCAACAGGUGACUCCAGU---------- --(((.......((((..(.......)..)---)))((((((((....((((((((...))))))))....(((...-)))))))))))..)))...---------- ( -36.00) >DroEre_CAF1 5117 100 + 1 --CGAAUACUUCUAGUUGCCGGAUUCCUGG---CUGCACCUGUUGAUCAACUGCAGCUCCCGCGGG-UUUGGCCUUG-GGCAACAGGUGACUCUAGUUGGAAAAGCA --......((.((((..(((((....))))---)..(((((((((..(((..((....((....))-....)).)))-..)))))))))...))))..))....... ( -33.30) >DroYak_CAF1 5379 106 + 1 GGGGAAUACUUUUAGUUGGCGGAUUCCUGAUUCCUGCACCUGUUGAUCGCCUGCAGGUCCUGCAGC-UUUAACCUUGGGGCAACAGGUGACACUAGUUGGGAAAGCA ..................((...((((..(((..(((((((((((...((.(((((...)))))))-.....((....))))))))))).))..)))..)))).)). ( -35.70) >consensus __GGAAUACUUUCAGUUGGCGGAUUCUUGG___CUGCACCUGUUGAUCGCCUGCAGGUCCUGCGGGCUUUGGCCUUG_GGCAACAGGUGACUCCAGU_GG_A_AGCA ..........................((((......((((((((....((((((((...))))))))....(((....)))))))))))...))))........... (-24.98 = -25.74 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:50 2006