Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,888,441 – 19,888,538 |
Length | 97 |
Max. P | 0.697123 |
Location | 19,888,441 – 19,888,538 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 93.86 |
Mean single sequence MFE | -28.08 |
Consensus MFE | -24.00 |
Energy contribution | -24.04 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.11 |
Mean z-score | -1.35 |
Structure conservation index | 0.85 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19888441 97 + 22224390 CGGCUGCUCUUCCAAACCGACGAACAUAAUCCCAUUAGGAACACCUCGUCGCGAUUUGGACGGAAAUUCCGCUGGCAACAGUUAGUCGUUA------UGUUCA ((((((.((((((((((((((((......(((.....))).....)))))).).)))))).)))......((((....))))))))))...------...... ( -29.20) >DroSec_CAF1 3010 97 + 1 CGGCUGCUCUUCCGACCCGACGAACAUAAUCCCAUUAGGAACACCUCGUCGCGAUUUGGACGGAAAUUCCGCUGGCAACAGUUAGUCGUUA------UGUUCA ((((((...(((((.((((((((......(((.....))).....))))))......)).))))).....((((....))))))))))...------...... ( -27.50) >DroSim_CAF1 2540 97 + 1 CGGCUGCUCUUCCGACCCGACGAACAUAAUCCCAUUAGGAACACCUCGUCGCGAUUUGGACGGAAAUUCCGCUGGCAACAGUUAGUCGUUA------UGUUCA ((((((...(((((.((((((((......(((.....))).....))))))......)).))))).....((((....))))))))))...------...... ( -27.50) >DroEre_CAF1 2950 103 + 1 CGGCUGCUCCUCCAACCCGACGAACAUAAUCCCAUUAGGAACACCUCGUCGCGAUUUGGACGCACAUUCCGCUGGCAACAGUUAGUCGUUAGGUUCAUGUUCA (((((((...(((((.(((((((......(((.....))).....)))))).)..))))).)).......((((....)))).)))))............... ( -26.10) >DroYak_CAF1 3042 97 + 1 AGGCUGCUCUUCCGAGCCGACGAACAUAAUCCCAUUAGGAACACCUCGAUGCGAUUUGGACGGAAAUUCCGCUGGCAACAGUUAGUCGUUA------UGUUCA .((((.(......)))))...((((((((((.(((((((....))).)))).))....(((((.....))((((....))))..))).)))------))))). ( -30.10) >consensus CGGCUGCUCUUCCGACCCGACGAACAUAAUCCCAUUAGGAACACCUCGUCGCGAUUUGGACGGAAAUUCCGCUGGCAACAGUUAGUCGUUA______UGUUCA ((((((.((((((((..((((((......(((.....))).....))))))....))))).)))......((((....))))))))))............... (-24.00 = -24.04 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:48 2006