Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,887,551 – 19,887,646 |
Length | 95 |
Max. P | 0.657050 |
Location | 19,887,551 – 19,887,646 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 70.81 |
Mean single sequence MFE | -29.47 |
Consensus MFE | -12.78 |
Energy contribution | -15.24 |
Covariance contribution | 2.46 |
Combinations/Pair | 1.10 |
Mean z-score | -1.75 |
Structure conservation index | 0.43 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19887551 95 - 22224390 CGGCAUCAGCUGGCUAUGCCACGAGUGGGCCGAAGGACACUCCCGUCCUUCGUCCUCCAAAGUGGCAU----ACAGACAAACAAACCAACAGGCAGUCG ((((....((((..((((((((..(..((.((((((((......)))))))).))..)...)))))))----)))).).......((....))..)))) ( -36.80) >DroSec_CAF1 2151 95 - 1 CGGCAUCAGCUGGCUACGCCACGAGUGGGCCGAAGGACACUCUCGUCCUUCGUCCUCCAAAGUGGCAU----AGAGACAAACAAACCAACAGGCAGUCG ((((....)))).(((.(((((..(..((.((((((((......)))))))).))..)...))))).)----)).(((.................))). ( -34.73) >DroEre_CAF1 2134 80 - 1 CGACAUCAGCUGGCUACGCCCCGAGUGGGUCGAAGGACACCCUCGUCCUUCGUCCUGCAC-------------------AACAAACCAACUGGCGGUCG ((((.((((.(((...((...)).(..((.((((((((......)))))))).))..)..-------------------......))).))))..)))) ( -31.30) >DroYak_CAF1 2145 99 - 1 CGGCAUCAGCUGGUUACGCCACCAGUGCGCCGAAGGACACUCUCGUCAUUCGUCCUCCAAACUGGCAUACAUACAGACAAACAAACCAACAGGCAGUCG ((((....((((((......))))))..((((.(((((.............))))).)...(((.........)))...............))).)))) ( -24.52) >DroAna_CAF1 21980 77 - 1 CGCCCUCAGCUGG------------UGGCCCGAAGGACACUCUGCUCCUCAGUCA----GACAGGGAC----GGCGACAAACAGAC--ACCGGAUGAAA .....(((.((((------------((((((....)...(((((((........)----).)))))..----)))(.....)...)--))))).))).. ( -20.00) >consensus CGGCAUCAGCUGGCUACGCCACGAGUGGGCCGAAGGACACUCUCGUCCUUCGUCCUCCAAACUGGCAU____ACAGACAAACAAACCAACAGGCAGUCG ((((....((((((...)))....(..((.((((((((......)))))))).))..).................................))).)))) (-12.78 = -15.24 + 2.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:47 2006