Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,212,853 – 2,212,945 |
Length | 92 |
Max. P | 0.750260 |
Location | 2,212,853 – 2,212,945 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 85.66 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -18.30 |
Energy contribution | -17.93 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.09 |
Mean z-score | -1.71 |
Structure conservation index | 0.80 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2212853 92 + 22224390 AGUAUACUCCACUUCUUUCUGUGCAUCAACUCGCACUCCAACUCUGACGUCAGUCAUUAGUUCGCAGAAUGGGGUCAAC------UGCAG-UACUGCAU (((..((((((.((((....((((........))))...((((.((((....))))..))))...))))))))))..))------)(((.-...))).. ( -22.90) >DroSec_CAF1 11094 99 + 1 AGUAUACUCCACUUCUCUCUGUGCAGCAACUCGCACUCCAACUCUGACGUCAGUCAUUAGUUCGCAGAAUGGGGUCAACUAGUACUGCAGUUACUGCAU (((..((((((.(((((...((((........))))...((((.((((....))))..)))).).))))))))))..))).....(((((...))))). ( -24.50) >DroEre_CAF1 11401 84 + 1 AGUAUACUCCACUUUUUUCUGUGCAGCAACUCGCACUCCAACUCUGACGUCAGUCAUUAGUUCGCAGAAUGGGGUCAAC------AGCAA--------- .((..((((((.....(((((((..((.....)).....((((.((((....))))..)))))))))))))))))..))------.....--------- ( -20.40) >DroYak_CAF1 12223 84 + 1 AUUAUGCUCCACUUCUCUUUGUGCAGCAACUCGCACUGCAACUCUGACGUCAGUCAUUAGUUCGCAGAAUGGGGUCAAC------UGCAG--------- ....((((.(((........))).)))).((((..((((((((.((((....))))..)))).))))..))))......------.....--------- ( -23.40) >consensus AGUAUACUCCACUUCUCUCUGUGCAGCAACUCGCACUCCAACUCUGACGUCAGUCAUUAGUUCGCAGAAUGGGGUCAAC______UGCAG_________ .....((((((.((((....((((........))))...((((.((((....))))..))))...))))))))))........................ (-18.30 = -17.93 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:04 2006