Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,845,992 – 19,846,112 |
Length | 120 |
Max. P | 0.764209 |
Location | 19,845,992 – 19,846,112 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.24 |
Mean single sequence MFE | -23.21 |
Consensus MFE | -15.02 |
Energy contribution | -16.13 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.77 |
Structure conservation index | 0.65 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19845992 120 - 22224390 CUGAUUCUGGGAAACUGGCUCCGCCGAGUGUAUUCGACUAUGCGAUACCUCUUACCCGCAGAUCAGUCAACAAAUACCUAUGUGACAGCUACCUCUACUUACUAAUAGUAUUCACAUCCA ((((((.((((.....(((...)))(((.((((.((......)))))))))...))))..)))))).............((((((..((((..............))))..))))))... ( -26.34) >DroSec_CAF1 3964 100 - 1 CUGAUUCCGGUUAUCUGGCUUCGCCGAGUGAAUUCGACUGUGCGAUACCCAUUACCCGCAGCUCAGUCAACUA---CU-----------------UAUUUACUAAUAAUAUUCACAUCCC ..((..((((....))))..)).....((((((..(((((((((............))))...))))).....---.(-----------------((((....))))).))))))..... ( -21.20) >DroSim_CAF1 580 100 - 1 CUCAUUCCGGGUAUCUGGCUUCGCCGAGUGAAUUCGACUAUGCGAUACCUAUUACCCGCAGCUCAGUCAACUA---CU-----------------UAUUUACUGAUAAUAUUCACAUCCC .......((((((...((..((((..(((.......)))..))))..))...))))))....(((((.((...---..-----------------..)).)))))............... ( -22.10) >consensus CUGAUUCCGGGUAUCUGGCUUCGCCGAGUGAAUUCGACUAUGCGAUACCUAUUACCCGCAGCUCAGUCAACUA___CU_________________UAUUUACUAAUAAUAUUCACAUCCC ((((((.((((((...((..((((..(((.......)))..))))..))...)))))).)).))))...................................................... (-15.02 = -16.13 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:49 2006